View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20572_low_3 (Length: 358)
Name: NF20572_low_3
Description: NF20572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20572_low_3 |
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| [»] scaffold0363 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 340
Target Start/End: Original strand, 5604719 - 5605043
Alignment:
| Q |
16 |
atttgttgattttgagtcttttgaaacttgttatacaaattctttcacctgaactattgtccaagtagcactcacatccaaaacgtacatcatatcccat |
115 |
Q |
| |
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|||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||| | ||||||| | ||||| |
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| T |
5604719 |
attttttgatgttgagccttttgaaacttgttatacatattctttcacctgaactattttccaagttgcactcacatccaaatcctacatcaaaacccat |
5604818 |
T |
|
| Q |
116 |
atggccttgagaaagaacaaagtagtaggcaaaacccaacaaattagaaggaagctcaagagtgacacaaacttcagtagaagagtaatggaaccaattt |
215 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||| |
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| T |
5604819 |
atggccttgagaaagaacaacgtagtaggcaaaacccaacaaattagaaggaagctcaagagtcacagaaacttcagtagaagggtaatggaaccaattt |
5604918 |
T |
|
| Q |
216 |
tccatgccaggcatagcaggtatcaaaataatatgatcgtgtgcatcttcattttctgaattttttcttgctccaagttcaatcccaaccatagaatctt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5604919 |
tccatgccaggcatagcaggtatcaaaataatatgatcgtgtgcatcttcattttctgaattttttcttgctccaagttcaatcccacccatagaatctt |
5605018 |
T |
|
| Q |
316 |
tcaaaactgtttggtatgaatgtgg |
340 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
5605019 |
tcaaaactgtttggtatgaatgtgg |
5605043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 340
Target Start/End: Complemental strand, 5630651 - 5630327
Alignment:
| Q |
16 |
atttgttgattttgagtcttttgaaacttgttatacaaattctttcacctgaactattgtccaagtagcactcacatccaaaacgtacatcatatcccat |
115 |
Q |
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|||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||| | ||||||| | ||||| |
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| T |
5630651 |
attttttgatgttgagccttttgaaacttgttatacatattctttcacctgaactattttccaagttgcactcacatccaaatcctacatcaaaacccat |
5630552 |
T |
|
| Q |
116 |
atggccttgagaaagaacaaagtagtaggcaaaacccaacaaattagaaggaagctcaagagtgacacaaacttcagtagaagagtaatggaaccaattt |
215 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||| |
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| T |
5630551 |
atggccttgagaaagaacaacgtagtaggcaaaacccaacaaattagaaggaagctcaagagtcacagaaacttcagtagaagggtaatggaaccaattt |
5630452 |
T |
|
| Q |
216 |
tccatgccaggcatagcaggtatcaaaataatatgatcgtgtgcatcttcattttctgaattttttcttgctccaagttcaatcccaaccatagaatctt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5630451 |
tccatgccaggcatagcaggtatcaaaataatatgatcgtgtgcatcttcattttctgaattttttcttgctccaagttcaatcccacccatagaatctt |
5630352 |
T |
|
| Q |
316 |
tcaaaactgtttggtatgaatgtgg |
340 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
5630351 |
tcaaaactgtttggtatgaatgtgg |
5630327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 54 - 339
Target Start/End: Complemental strand, 5554087 - 5553796
Alignment:
| Q |
54 |
attctttcacctgaactattgtccaagtagcactcacatccaaaacgtacatcatatcccatatggccttgagaaagaacaaagtagtaggcaaaaccca |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |||| || |||| ||| ||| | ||||| |||||||| ||||||||||||||||||| |
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| T |
5554087 |
attctttcacctgaactattgtccaagtagcactcatatccgaaacctatatcagatcttatacgaccttgtgaaagaaccaagtagtaggcaaaaccca |
5553988 |
T |
|
| Q |
154 |
acaaattagaaggaagctcaagagtgacacaaacttcagtagaagagtaatggaaccaattttccatgccaggcatagcaggta------tcaaaataat |
247 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||| |
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| T |
5553987 |
acaaattagaaggaagctcaagagtgacacaaacttcagtagaagagtaatggaaccaattttccatgccaggcatagctggtaagaagttgaaaataat |
5553888 |
T |
|
| Q |
248 |
atgatcgtgtgcatcttcattttctgaattttttcttgctccaagttcaatcccaaccatagaatctttcaaaactgtttggtatgaatgtg |
339 |
Q |
| |
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|| | |||| ||| ||||||||||||||||| ||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||| |
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|
| T |
5553887 |
atctttgtgtccatattcattttctgaattttctcttgcttcaagttcaatttgaaccatagcatctttcaaaactgtttggtatgaatgtg |
5553796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 37 - 340
Target Start/End: Complemental strand, 5648123 - 5647814
Alignment:
| Q |
37 |
tgaaacttgttatacaaattctttcacctgaactattgtccaagtagcactcacatccaaaacgtacatcatatcccatatggccttgagaaagaacaaa |
136 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||||||| | ||||||||||| |||| || | |||| |||| |||||||||| || |
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| T |
5648123 |
tgaaacttgttatacagatcctttcacctgaactattgtccaagtagcatttacatccaaaacctacaccaaaatccatgatgcctggagaaagaaccaa |
5648024 |
T |
|
| Q |
137 |
gtagtaggcaaaacccaacaaattagaaggaagctcaagagtgacacaaacttcagtagaagagtaatggaaccaattttccatgccaggcatagcaggt |
236 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||| | ||||||||||||||| |
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|
| T |
5648023 |
gtagtatgcaaaacccaacaaattagaaggaagctcaagagtgtcagaaacttgtgtagaagagtaatggaaccaattttccgttccaggcatagcaggt |
5647924 |
T |
|
| Q |
237 |
a------tcaaaataatatgatcgtgtgcatcttcattttctgaattttttcttgctccaagttcaatcccaaccatagaatctttcaaaactgtttggt |
330 |
Q |
| |
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| |||||||||||| || |||||||||||||||||||||| | | ||||||| ||||||||| |||| |||||| |||||||||||||| |||| |
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| T |
5647923 |
aagaagttcaaaataatataattgtgtgcatcttcattttctgaactatgtcttgcttcaagttcaaacccatccatagcctctttcaaaactgtctggt |
5647824 |
T |
|
| Q |
331 |
atgaatgtgg |
340 |
Q |
| |
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|||||||||| |
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| T |
5647823 |
atgaatgtgg |
5647814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 32 - 237
Target Start/End: Original strand, 6307737 - 6307942
Alignment:
| Q |
32 |
tcttttgaaacttgttatacaaattctttcacctgaactattgtccaagtagcactcacatccaaaacgtacatcatatcccatatggccttgagaaaga |
131 |
Q |
| |
|
|||| |||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
6307737 |
tcttgtgaaacttgttatatagattctttcacctgaactattgtccaaatagcactcacatccaaaatccacatcatatcccatatggccttgagaaaga |
6307836 |
T |
|
| Q |
132 |
acaaagtagtaggcaaaacccaacaaattagaaggaagctcaagagtgacacaaacttcagtagaagagtaatggaaccaattttccatgccaggcatag |
231 |
Q |
| |
|
|| |||||||| | ||| ||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6307837 |
accaagtagtacgaaaatccctgtaaattagacggaagctcaagagtgacacaaacttgtgtagaagagtaatggaaccaattttccatgccaggcatag |
6307936 |
T |
|
| Q |
232 |
caggta |
237 |
Q |
| |
|
|||||| |
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|
| T |
6307937 |
caggta |
6307942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 37 - 237
Target Start/End: Complemental strand, 13167832 - 13167632
Alignment:
| Q |
37 |
tgaaacttgttatacaaattctttcacctgaactattgtccaagtagcactcacatccaaaacgtacatcatatcccatatggccttgagaaagaacaaa |
136 |
Q |
| |
|
|||||||||||||| | | | ||||||| ||| ||||||||||| ||||||||||||||||| |||| ||||||||||| |||||||||||||||| || |
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|
| T |
13167832 |
tgaaacttgttatatagactttttcaccagaattattgtccaagaagcactcacatccaaaatctacaccatatcccatacggccttgagaaagaaccaa |
13167733 |
T |
|
| Q |
137 |
gtagtaggcaaaacccaacaaattagaaggaagctcaagagtgacacaaacttcagtagaagagtaatggaaccaattttccatgccaggcatagcaggt |
236 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13167732 |
gtagtaggcaaaacccgacaaattagaaggaagctcaagagtgacagaaacttgtgtagaagagtaatggaaccaattttccatgccaggcatagcaggt |
13167633 |
T |
|
| Q |
237 |
a |
237 |
Q |
| |
|
| |
|
|
| T |
13167632 |
a |
13167632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 32 - 237
Target Start/End: Complemental strand, 32635975 - 32635770
Alignment:
| Q |
32 |
tcttttgaaacttgttatacaaattctttcacctgaactattgtccaagtagcactcacatccaaaacgtacatcatatcccatatggccttgagaaaga |
131 |
Q |
| |
|
|||| |||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| |
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|
| T |
32635975 |
tcttgtgaaacttgttatatagatcctttcacctgaactattgtccaagtagcactcacatccaaaatctacaccatatcccatatggcctggagaaaga |
32635876 |
T |
|
| Q |
132 |
acaaagtagtaggcaaaacccaacaaattagaaggaagctcaagagtgacacaaacttcagtagaagagtaatggaaccaattttccatgccaggcatag |
231 |
Q |
| |
|
|| |||||||||||||||||||||||||||| ||||||||||||||| ||| |||||| ||||||| || ||| ||||||| ||| ||||||||||||| |
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|
| T |
32635875 |
accaagtagtaggcaaaacccaacaaattaggaggaagctcaagagtaacagaaacttgtgtagaagggtgatgaaaccaatattctatgccaggcatag |
32635776 |
T |
|
| Q |
232 |
caggta |
237 |
Q |
| |
|
|||||| |
|
|
| T |
32635775 |
caggta |
32635770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 14407109 - 14407059
Alignment:
| Q |
289 |
caagttcaatcccaaccatagaatctttcaaaactgtttggtatgaatgtg |
339 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14407109 |
caagttcaatcccatccatagcatctttcaaaactgtttggtatgaatgtg |
14407059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 341
Target Start/End: Original strand, 6308000 - 6308037
Alignment:
| Q |
304 |
ccatagaatctttcaaaactgtttggtatgaatgtggt |
341 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6308000 |
ccatagcatctttcaaaactgtttggtatgaatgtggt |
6308037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 335
Target Start/End: Complemental strand, 32635728 - 32635654
Alignment:
| Q |
261 |
tcttcattttctgaattttttcttgctccaagttcaatcccaaccatagaatctttcaaaactgtttggtatgaa |
335 |
Q |
| |
|
|||||||||||||||||| |||||||||||| || ||||| || |||| || || | |||||||| |||||||| |
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| T |
32635728 |
tcttcattttctgaatttattcttgctccaaatttaatccaaaaaatagcatattccgaaactgttcggtatgaa |
32635654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 340
Target Start/End: Complemental strand, 13167583 - 13167526
Alignment:
| Q |
283 |
ttgctccaagttcaatcccaaccatagaatctttcaaaactgtttggtatgaatgtgg |
340 |
Q |
| |
|
||||| |||||||||||| |||||| ||| || ||||||||||||||||||||||| |
|
|
| T |
13167583 |
ttgctacaagttcaatcctttccatagcatcgtttaaaactgtttggtatgaatgtgg |
13167526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 11744 - 11794
Alignment:
| Q |
289 |
caagttcaatcccaaccatagaatctttcaaaactgtttggtatgaatgtg |
339 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11744 |
caagttcaatcccatccatagcatctttcaaaactgtttggtatgaatgtg |
11794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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