View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20572_low_4 (Length: 354)
Name: NF20572_low_4
Description: NF20572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20572_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 337
Target Start/End: Complemental strand, 42854971 - 42854652
Alignment:
| Q |
19 |
gaatgagaaagaataccat-atatatcttatgcatatattatattgtatctgagtcaaaaaacaaaagcaggtcgaacatccattgacagagagtaatct |
117 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42854971 |
gaatgagaaagaataccatgatatatcttatgcacatattatattgtatctgagtcaaaaaacaaaggcaggtcgaacatccattgacagagagtaatct |
42854872 |
T |
|
| Q |
118 |
aattgacttaaggacatatatactgcagtgatcctaatcaataactttgatagaatggcctcataagttctaagttaagcaatatctatatagcggaaga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42854871 |
aattgacttaaggacatatatactgcagtgatcctaatcaataactttgatagaatggcctcacaagttctaagttaagcaatatctatatagcggaaga |
42854772 |
T |
|
| Q |
218 |
cagagaaacggacctcaatgttgtcaagcaagtcacaaataccactgcaataaacactacattttttacaatctgaataaaaaatttaaaccgaataaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42854771 |
tgcagaaacggacctcaatgttgtcaagcaagtcacaaataccactgcaatgaacactacattttttacaatctgaataaaaaatttaaaccgaataaat |
42854672 |
T |
|
| Q |
318 |
ggttatatcttagcctacat |
337 |
Q |
| |
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|||||||||||||||||||| |
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| T |
42854671 |
ggttatatcttagcctacat |
42854652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 50 - 317
Target Start/End: Complemental strand, 42848390 - 42848129
Alignment:
| Q |
50 |
catatattatattgtatctgagtcaaaaaacaaaa-------gcaggtcgaacatccattgacagagagtaatctaattgacttaaggacatatatactg |
142 |
Q |
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|||||||||||||||||| ||||||||||| |||| |||||| ||||| || | |||||||||||||||||||||||||||||||||||||||| |
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| T |
42848390 |
catatattatattgtatcagagtcaaaaaaaaaaaaaacaaagcaggtggaacacccgtagacagagagtaatctaattgacttaaggacatatatactg |
42848291 |
T |
|
| Q |
143 |
cagtgatcctaatcaataactttgatagaatggcctcataagttctaagttaagcaatatctatatagcggaagacagagaaacggacctcaatgttgtc |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| | ||| |
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| T |
42848290 |
cagtgatcctaatcaataactttgatagaatggcctcataagttctaagttaagcaataactatatagcggaagacaaagaaatgtgcct---------- |
42848201 |
T |
|
| Q |
243 |
aagcaagtcacaaataccactgcaataaacactacattttttacaatctgaataaaaaatttaaaccgaataaat |
317 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42848200 |
---caagtcacaaataccactgcaataaacactacattttttacaatctgaataaaaaatttaaactgaataaat |
42848129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 40 - 264
Target Start/End: Complemental strand, 42856594 - 42856366
Alignment:
| Q |
40 |
atatcttatgcatatattatattgtatctgagtcaaaaaacaaaagcaggtcgaacatccattgacagagagtaatctaattgacttaagg----acata |
135 |
Q |
| |
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|||||||| ||| ||||||||||||||| | |||| |||| |||| |||| ||||| || | || |||||||| ||||||||| || | | ||| |
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| T |
42856594 |
atatcttacgcacttattatattgtatctcaatcaagaaaccaaaggaggtggaacaataataggcaaagagtaatgtaattgactcaatgatatatata |
42856495 |
T |
|
| Q |
136 |
tatactgcagtgatcctaatcaataactttgatagaatggcctcataagttctaagttaagcaatatctatatagcggaagacagagaaacggacctcaa |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||| ||||||||| ||||||| ||||| | ||||| |
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| T |
42856494 |
tatactgcagtgatcctaatcaataactttgacagaatggccttgcaagttcaaagttaagcaataactatatagctgaagacaaagaaatgtgtctcaa |
42856395 |
T |
|
| Q |
236 |
tgttgtcaagcaagtcacaaataccactg |
264 |
Q |
| |
|
|||||||||||||||| ||||||||||| |
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| T |
42856394 |
tgttgtcaagcaagtcgtaaataccactg |
42856366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 133 - 264
Target Start/End: Complemental strand, 42860564 - 42860433
Alignment:
| Q |
133 |
atatatactgcagtgatcctaatcaataactttgatagaatggcctcataagttctaagttaagcaatatctatatagcggaagacagagaaacggacct |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||| ||||||||| ||||||| ||||| | || |
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| T |
42860564 |
atatatactgcagtgatcctaatcaataactttgacagaatggccttgcaagttcaaagttaagcaataactatatagctgaagacaaagaaatgtgtct |
42860465 |
T |
|
| Q |
233 |
caatgttgtcaagcaagtcacaaataccactg |
264 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |
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| T |
42860464 |
caatgttgtcaagcaagtcgtaaataccactg |
42860433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 38 - 325
Target Start/End: Complemental strand, 42853062 - 42852768
Alignment:
| Q |
38 |
atatatcttatgcatatattatattgtatctgagtcaaaaaaca--aaagcaggtcgaacatccattgacagagagtaatctaattgacttaag----ga |
131 |
Q |
| |
|
|||||||||||||| ||||||||| |||||| || |||||| | |||||| || ||||| ||| |||||||| ||||||||| ||||||| || |
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| T |
42853062 |
atatatcttatgcacatattatatcgtatcttcgtaaaaaaaaaccaaagcatgtggaacacacatagacagagattaatctaatcgacttaattcatga |
42852963 |
T |
|
| Q |
132 |
catatatactgcagtgatcctaatcaataactttgatagaatggcctcataagttctaagttaagcaatatctatatagcggaagacagagaaacggacc |
231 |
Q |
| |
|
||||| ||||| ||| |||| |||||||||||||||||||||||| | |||||| ||| ||||||||| ||||| ||| | ||| | ||||| | | |
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|
| T |
42852962 |
catatgtactgtagtaatccaaatcaataactttgatagaatggcttgccaagttcaaagataagcaataactatacagcagcagaaaaagaaatgtgtc |
42852863 |
T |
|
| Q |
232 |
tcaatgttgtcaagcaagtcacaaataccactgcaataaacactacat-tttttacaatctgaataaaaaatttaaaccgaataaatggttatat |
325 |
Q |
| |
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||||||| |||||||||||| |||| | | | ||||||||||||| | | ||||||||| ||||||| ||||| ||| ||||||||||||| |
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| T |
42852862 |
tcaatgtcgtcaagcaagtcgcaaaaataccaactataaacactacatataatcacaatctgagtaaaaaaattaaaacgattaaatggttatat |
42852768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 27198 - 27095
Alignment:
| Q |
19 |
gaatgagaaagaataccat-atatatcttatgcatatattatattgtatctgagtc-aaaaaacaaaagcaggtcgaacatccattgacagagagtaatc |
116 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||| |||||| ||||||||| | | ||||||| ||||||||| ||||| || ||||| |||||||| |
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|
| T |
27198 |
gaatgaaaaagaataccacgatatatcttatgcacatattacattgtatctcggacaaaaaaaccaaagcaggtggaacactaatagacagtgagtaatc |
27099 |
T |
|
| Q |
117 |
taat |
120 |
Q |
| |
|
|||| |
|
|
| T |
27098 |
taat |
27095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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