View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20572_low_7 (Length: 247)
Name: NF20572_low_7
Description: NF20572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20572_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 42855276 - 42855511
Alignment:
| Q |
1 |
taataaactacaaggtgctttcaaacttcttcctccttaatttcaaagactattattgtgttgaacatgttttcgactcgtattgtagaaggacttcatg |
100 |
Q |
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| T |
42855276 |
taataaattacaaggtgctttcaaacttcttcctccttaatttcaaagactattattgtgttgaacatgttttcgactcgtattgtagaaggactacatg |
42855375 |
T |
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| Q |
101 |
agcttgcgtacactagagagtcatgtatccattttcctccgacgagcaactatgcttggaatttccaaagcccacaacgatgtaagaaccaaggtgtggt |
200 |
Q |
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| T |
42855376 |
agcttgcgtacactagagagtcatttatccattttcctccgacgagcaactatgcttggaagttccaaagcccacaacgatgtaagcaccaaggtgtggt |
42855475 |
T |
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| Q |
201 |
gtaacgcattactcttattttctgtttctgcatatt |
236 |
Q |
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| T |
42855476 |
gtaacgcattactcttattttctgtttctgcatatt |
42855511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 27 - 236
Target Start/End: Original strand, 42856895 - 42857104
Alignment:
| Q |
27 |
ttcttcctccttaatttcaaagactattattgtgttgaacatgttttcgactcgtattgtagaaggacttcatgagcttgcgtacactagagagtcatgt |
126 |
Q |
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| T |
42856895 |
ttcttcctccttaaattcaaagactgttattgtgttgacaatgttttcgacttgtcttttaggatgactacatgaacttggatacactagagagtcgttt |
42856994 |
T |
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| Q |
127 |
atccattttcctccgacgagcaactatgcttggaatttccaaagcccacaacgatgtaagaaccaaggtgtggtgtaacgcattactcttattttctgtt |
226 |
Q |
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| T |
42856995 |
atctaatttcctccgacaagcaactatgcatggaagttccaaagctcacaaaactgtaagcaccaaggtgtgttgtaacacatcactcttattttctgtt |
42857094 |
T |
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| Q |
227 |
tctgcatatt |
236 |
Q |
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| T |
42857095 |
tctgcatatt |
42857104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 27 - 155
Target Start/End: Original strand, 42860972 - 42861100
Alignment:
| Q |
27 |
ttcttcctccttaatttcaaagactattattgtgttgaacatgttttcgactcgtattgtagaaggacttcatgagcttgcgtacactagagagtcatgt |
126 |
Q |
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| T |
42860972 |
ttcttcctccttaaattcaaagactgttattgtgttgacaatgttttcgacttgtcttttaggatgactacatgaacttggatacactagagagtcgttt |
42861071 |
T |
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| Q |
127 |
atccattttcctccgacgagcaactatgc |
155 |
Q |
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| T |
42861072 |
atctaatttcctccgacaagcaactatgc |
42861100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 154
Target Start/End: Original strand, 27482 - 27605
Alignment:
| Q |
29 |
cttcctccttaatttcaaagactattattgtgttgaacatgttttcgactcgtattgtagaaggacttcatgagcttgcgtacactagagagtcatgtat |
128 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||||||| || || ||| |||| | ||||| |||| ||||||||| || | ||| |
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| T |
27482 |
cttcctccttaatttcaaagact--tattgtgttgacaatgttttcgacttgtcttttaggaggagtacatgaacttggaaacactagaggctcgtttat |
27579 |
T |
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| Q |
129 |
ccattttcctccgacgagcaactatg |
154 |
Q |
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| T |
27580 |
ctcttttcctccgacaagcaactatg |
27605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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