View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20572_low_8 (Length: 241)
Name: NF20572_low_8
Description: NF20572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20572_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 49302632 - 49302742
Alignment:
| Q |
1 |
atatttaatttaaggttttgtcaatatgatacacatattttttatataccgtattnnnnnnnnnnncttgttgaaatgttacaagagtcatattcaacac |
100 |
Q |
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| T |
49302632 |
atatttaatataaggttttgtcaatatgatacacatattttttatataccgtatt--aaaaaaaaacttgttgaaatgttacaagagtcatattcaacgc |
49302729 |
T |
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| Q |
101 |
tgtatattttgtc |
113 |
Q |
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||||| ||||||| |
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| T |
49302730 |
tgtatcttttgtc |
49302742 |
T |
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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 49302813 - 49302855
Alignment:
| Q |
184 |
gttgtgaagtgaaactattttacagacattttaattatatttc |
226 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| |
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| T |
49302813 |
gttgtgaagtaaaactattttacagacattttaattatatttc |
49302855 |
T |
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