View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20573_high_1 (Length: 655)
Name: NF20573_high_1
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 261 - 648
Target Start/End: Original strand, 45458803 - 45459188
Alignment:
| Q |
261 |
gaacttaagagcgtggttaaacattaaagtgaaatatagacatcccaaccctgttgacattcctaataaacatgctctactatacccactcataaaatga |
360 |
Q |
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| T |
45458803 |
gaacttaagagtgtggttaaacattaaagtgaaacgtagacatcccaaccctgttgacactcctaataaacatgctctacta--cccactcataaaatga |
45458900 |
T |
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| Q |
361 |
taaaatagcaatgatatttgtaggcagtaatgttgatcaaccacctttgagttcacctttagagcgaaagtaataggcagtgattcaagtattctgatgt |
460 |
Q |
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| T |
45458901 |
taaaatagcaatgatatttgtaggaagtggtgttgatcaaccacctttgagttcacctttagagcgaaagtaataggcagtgattcaagtattctgatgc |
45459000 |
T |
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| Q |
461 |
attttatccttctgatttttcgtcaagtagggagtaaaaggagcctctaagttctcgttctcattaaccaaaaaatgtttaattaagtctagatccttct |
560 |
Q |
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| T |
45459001 |
attttatccttctgattttttgtcaagtagggagtaaaaggagcctctaagtcctcgttctcattaaccaaaaaatgtttaattaagtctagatccttct |
45459100 |
T |
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| Q |
561 |
gtagcacaaggcatatgtggggaggattagtcgtggttgtctcttggtttgtttgagtttctggaacaaattttatgtgtgatgatgt |
648 |
Q |
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| T |
45459101 |
gtagcacaaggcatatgtggggaggattagtcgtggttgtctcttggtttgtttgagtttcgggaacaaattttatgtgtgatgatgt |
45459188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 86 - 215
Target Start/End: Original strand, 45458628 - 45458757
Alignment:
| Q |
86 |
gtcaggtaactaatggttgacctgacacgccttgagagggaagaagtgtggatttcgatgtttgaacaccgacccttgcatgttattgttcttgcaacta |
185 |
Q |
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| T |
45458628 |
gtcaagtagctaatggttgacctgacacgccttgagaggggagaagtgtggatttcgatgtttgaacaccgacccttgcatgtcattgttcttgcaacta |
45458727 |
T |
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| Q |
186 |
acaattgaattgtaattacatgactcttgc |
215 |
Q |
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| T |
45458728 |
acaattgagttgaaattacatgactcttgc |
45458757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 45458570 - 45458607
Alignment:
| Q |
14 |
gatctcgctaaaaagtgtacgtcctgtataaatttgat |
51 |
Q |
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| T |
45458570 |
gatctcgctaaaaaatgtacgtcctatataaatttgat |
45458607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 491 - 561
Target Start/End: Original strand, 23536499 - 23536569
Alignment:
| Q |
491 |
ggagtaaaaggagcctctaagttctcgttctcattaaccaaaaaatgtttaattaagtctagatccttctg |
561 |
Q |
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| T |
23536499 |
ggagtaaaaagagcctctaaatcctctttctcattaatcaatatatgtttaattaagtcaagatccttctg |
23536569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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