View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20573_high_15 (Length: 443)
Name: NF20573_high_15
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_high_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 9 - 429
Target Start/End: Original strand, 10595223 - 10595634
Alignment:
| Q |
9 |
gaagaaaatgaaagattggtgtgagggaattggttttctctactttcnnnnnnngtaaccgtgaaagataatttttggttgttgagaagtaaaatttacc |
108 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10595223 |
gaagaaaatgaaagattggtgtgacggaattggttttctctactttcgttttttgtaaccgtgaaagataatttttggtcgttgagaagtaaaatttact |
10595322 |
T |
|
| Q |
109 |
gaaagatgtatatatgatttcaaagtgatatttatttattgtgttgtagattcttatcttatttgctagcttctttattttgaaagtgttgtgtgacggt |
208 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10595323 |
gaaagatgtatatatgatttcaaa---------atttattgtgttgtagattcttatcttatttgctagcttctttattttgaaagtgtcgtgtgacggt |
10595413 |
T |
|
| Q |
209 |
aagaaaaaacaatttaatgaaatatttctggtaaaaacaaaacaaatgttcaaagtgcagagcaattcgaggaaaaatagcagtgtaatattagaaatga |
308 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10595414 |
aataaaaaacaatttaatgaaatatttctggtaaaaacaaaacaaatgttcaaagtgcagagcaattcgaggaaaaatagcagtgtaatattagaaatga |
10595513 |
T |
|
| Q |
309 |
gtttttcatcaaagtaaacaaagaaagaagatggtgaaacctcttctcaccaaaaacgggggtcattgtcactgcaagggcaaggtcagtcctccattta |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10595514 |
gtttttcatcaaagtaaacaaagaaagaagatggtgaaacctcttctcaccaaaaacgggggtcattgtcactgcaagggcaaggtcagtcctccattta |
10595613 |
T |
|
| Q |
409 |
gttcttagagtgcaaaaattg |
429 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
10595614 |
gttcttagagtgcaaaaattg |
10595634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 38138111 - 38138066
Alignment:
| Q |
219 |
aatttaatgaaatatttctggtaaaaacaaaacaaatgttcaaagt |
264 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
38138111 |
aatttaatgaaatatttcttgttaaaacaaaacaaatgttcaaagt |
38138066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 41799978 - 41799932
Alignment:
| Q |
216 |
aacaatttaatgaaatatttctggtaaaaacaaaacaaatgttcaaa |
262 |
Q |
| |
|
|||||||||||||||||||||| || ||||||| ||||||| ||||| |
|
|
| T |
41799978 |
aacaatttaatgaaatatttctagtgaaaacaagacaaatgatcaaa |
41799932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 72 - 258
Target Start/End: Complemental strand, 2941989 - 2941802
Alignment:
| Q |
72 |
aaagataatttttggttgttgagaagtaaaatttaccgaaagatgtatatatgatttcaaagtga-tatttatttattgtgttgtagattcttatcttat |
170 |
Q |
| |
|
||||||||||||| ||||||||| | |||||| | |||||||||||||||||||| ||| | | |||||| | | |||||||||||| | ||||| | |
|
|
| T |
2941989 |
aaagataattttttcttgttgagaggaaaaattaatggaaagatgtatatatgatttgaaaattagtattta-taaatgtgttgtagatcgtcatcttct |
2941891 |
T |
|
| Q |
171 |
ttgctagcttctttattttgaaagtgttgtgtgacggtaagaaaa-aacaatttaatgaaatatttctggtaaaaacaaaacaaatgtt |
258 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2941890 |
ttgctaacttctttattttgaaagtgtcctgtgatggtaagaaaacagcaatttaatgaaatatttctggtaaaaacaaaacaaatgtt |
2941802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 110 - 250
Target Start/End: Complemental strand, 33582007 - 33581873
Alignment:
| Q |
110 |
aaagatgtatatatgatttcaaagtgatatttatttattgtgttgtagattcttatcttatttgctagcttctttattttgaaagtgttgtgtgacggta |
209 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||| ||| ||||| || || || ||||||| |||| |||||||||||||| ||||||| || |
|
|
| T |
33582007 |
aaagatgtatatatgatttaaaagtggtatttatt------gttttagatcctcattttctttgctaacttcactattttgaaagtgtcttgtgacgata |
33581914 |
T |
|
| Q |
210 |
agaaaaaacaatttaatgaaatatttctggtaaaaacaaaa |
250 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| |||||||||| |
|
|
| T |
33581913 |
agaaaaaacaatttaatgaagtatttgtggcaaaaacaaaa |
33581873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 353
Target Start/End: Complemental strand, 33581868 - 33581822
Alignment:
| Q |
307 |
gagtttttcatcaaagtaaacaaagaaagaagatggtgaaacctctt |
353 |
Q |
| |
|
||||||||||| ||||||||| || |||||||||||||||||||||| |
|
|
| T |
33581868 |
gagtttttcattaaagtaaaccaaaaaagaagatggtgaaacctctt |
33581822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 3380593 - 3380546
Alignment:
| Q |
216 |
aacaatttaatgaaatatttctggtaaaaacaaaacaaatgttcaaag |
263 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3380593 |
aacaatttaataaaatatttctggtaaaaacaaaacaaatgttcaaag |
3380546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 292
Target Start/End: Complemental strand, 10915773 - 10915697
Alignment:
| Q |
216 |
aacaatttaatgaaatatttctggtaaaaacaaaacaaatgttcaaagtgcagagcaattcgaggaaaaatagcagt |
292 |
Q |
| |
|
|||| |||||| ||||||||||||||||| ||| |||||| |||||||| ||||| | ||||||||||||||| |
|
|
| T |
10915773 |
aacattttaataaaatatttctggtaaaacgaaagcaaatgctcaaagtgattagcaacccaaggaaaaatagcagt |
10915697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University