View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20573_high_16 (Length: 429)
Name: NF20573_high_16
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 43 - 424
Target Start/End: Complemental strand, 2017440 - 2017059
Alignment:
| Q |
43 |
aacctcaacacatttacctttcctgccacatactaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgat |
142 |
Q |
| |
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||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2017440 |
aacctcaacccatatacctttcctgccacatactaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgat |
2017341 |
T |
|
| Q |
143 |
tgctacgacgaaaagagcatacaggtgaaccaatcattttggggtatcagaatgacacatcttcccgtctcatcaacacgaaacaagttttttgccgttg |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
2017340 |
tgctacgacgaaaagagcatacaggtgaaccaatcattttggggtatcagaatgacacattttcccgtctcatcaacacgaaacaagtttgttgccgttg |
2017241 |
T |
|
| Q |
243 |
gctgtgacacgattgcaatactcgcagcatttgattttgggggaaacaactacacgacgggatgtttggctttgtgcaacaggtttaatgatatcgtggc |
342 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2017240 |
gctgtgacacgattgcaatactcgcagcatttgattttgggggaaacaactacaccacgggatgtttggctttgtgcaacaggtttaatgatatcgtggc |
2017141 |
T |
|
| Q |
343 |
caatgaatcttgctccggcactggttgttgtcagatttcaataccgcaaggtcatttgttcgagaaagtgtcctttgctact |
424 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2017140 |
caatgaatcttgctccggcactggttgttgtcagatttcaataccgcaaggtcatttgttcgagaaagtgtcctttgttact |
2017059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 76 - 395
Target Start/End: Original strand, 40566267 - 40566586
Alignment:
| Q |
76 |
taatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgattgctacgacgaaaagagcatacaggtgaaccaa |
175 |
Q |
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|||||||| ||||||||| ||||| || |||||||| ||| ||||||||||||||||||||||||||||||| |||||| ||| | | ||||| |
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| T |
40566267 |
taatcaaaatgtcctaaatatctcactcaatggtgaattgcacgttgcatggccagtagccagcgattgctacgcagaaaagggcagattcatataccaa |
40566366 |
T |
|
| Q |
176 |
tcattttggggtatcagaatgacacatcttcccgtctcatcaacacgaaacaagttttttgccgttggctgtgacacgattgcaatactcgcagcatttg |
275 |
Q |
| |
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| | ||| ||| | ||||||||| || | |||| |||| ||||||||||| || ||||||||||||||||||| | |||| | || ||| |
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| T |
40566367 |
acgctgcgggatatgaacatgacacatttttacatctcgccaactcgaaacaagttgacagcagttggctgtgacacgattggagcactctcggcgattg |
40566466 |
T |
|
| Q |
276 |
attttgggggaaacaactacacgacgggatgtttggctttgtgcaacaggtttaatgatatcgtggccaatgaatcttgctccggcactggttgttgtca |
375 |
Q |
| |
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||| |||||||||||||||||| || |||||| ||||||| ||||||||| || ||||||| |||||| | |||||||||| || ||||||||||| | |
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| T |
40566467 |
attctgggggaaacaactacaccacaggatgtgtggctttatgcaacaggcttgatgatattatggccagtcaatcttgctcaggtactggttgttgcga |
40566566 |
T |
|
| Q |
376 |
gatttcaataccgcaaggtc |
395 |
Q |
| |
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|||||||||||| ||||||| |
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|
| T |
40566567 |
gatttcaataccccaaggtc |
40566586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 198 - 387
Target Start/End: Original strand, 40595769 - 40595958
Alignment:
| Q |
198 |
cacatcttcccgtctcatcaacacgaaacaagttttttgccgttggctgtgacacgattgcaatactcgcagcatttgattttgggggaaacaactacac |
297 |
Q |
| |
|
||||| ||| |||||| |||| | ||||||||| | || ||||| |||||||| || | | |||||| |||| |||||| | ||||||| ||||| |
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| T |
40595769 |
cacattttcacgtctcgccaactcaaaacaagttgatagcagttggatgtgacacaatgggactactcgaagcaattgattctaaaggaaacacatacac |
40595868 |
T |
|
| Q |
298 |
gacgggatgtttggctttgtgcaacaggtttaatgatatcgtggccaatgaatcttgctccggcactggttgttgtcagatttcaatacc |
387 |
Q |
| |
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|| | |||| |||| |||||||||||| ||| |||||| ||||||||||||||||| |||||| | ||||||||| ||||||||||||| |
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| T |
40595869 |
cactgcatgtgtggccttgtgcaacaggcttagtgatattgtggccaatgaatcttgttccggcccaggttgttgtgagatttcaatacc |
40595958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 43 - 147
Target Start/End: Original strand, 40570921 - 40571025
Alignment:
| Q |
43 |
aacctcaacacatttacctttcctgccacatactaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgat |
142 |
Q |
| |
|
|||||||||| | |||| ||| ||||||| |||||||||| ||| ||||||||||| || || ||||||||||||| ||||||||||||||| || ||| |
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| T |
40570921 |
aacctcaacagacgtaccattcttgccacagactaatcaaagtgttctaaacatctcactcgacggtgaactgcgtgctgcatggccagtagcaagtgat |
40571020 |
T |
|
| Q |
143 |
tgcta |
147 |
Q |
| |
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||||| |
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| T |
40571021 |
tgcta |
40571025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 43 - 147
Target Start/End: Original strand, 40577344 - 40577448
Alignment:
| Q |
43 |
aacctcaacacatttacctttcctgccacatactaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgat |
142 |
Q |
| |
|
|||||||||| | |||| ||| ||||||| |||||||||| ||| ||||||||||| ||| |||||||||| | ||||||||||||||||||||| || |
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|
| T |
40577344 |
aacctcaacagaggtaccattcttgccacagactaatcaaagtgttctaaacatctcacttaatggtgaacttcacgttgcatggccagtagccagctat |
40577443 |
T |
|
| Q |
143 |
tgcta |
147 |
Q |
| |
|
||||| |
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|
| T |
40577444 |
tgcta |
40577448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 395
Target Start/End: Original strand, 40589388 - 40589562
Alignment:
| Q |
221 |
cgaaacaagttttttgccgttggctgtgacacgattgcaatactcgcagcatttgattttgggggaaacaactacacgacgggatgtttggctttgtgca |
320 |
Q |
| |
|
||||||||||| | || ||||||||||| || || |||||||| || | |||||| || |||||||||||||| | ||||||||||||| ||||| |
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| T |
40589388 |
cgaaacaagttggtagcagttggctgtgatacatctggaatactcggagtaattgattctgaaggaaacaactacacctctggatgtttggcttggtgca |
40589487 |
T |
|
| Q |
321 |
acaggtttaatgatatcgtggccaatgaatcttgctccggcactggttgttgtcagatttcaataccgcaaggtc |
395 |
Q |
| |
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||||| |||| |||| |||||||| ||||| || || |||||||||| |||||||| |||| ||||||| |
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|
| T |
40589488 |
acaggcacgctgatctcgttgccaatgagtcttgttctggtcctggttgttgccagatttcggtaccccaaggtc |
40589562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 40595654 - 40595727
Alignment:
| Q |
74 |
actaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgattgcta |
147 |
Q |
| |
|
||||||||| |||| |||| || || ||| |||||||||||| ||||||||||||||||||||| ||||||| |
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|
| T |
40595654 |
actaatcaacgtgtcttaaatatatcacttaatggtgaactgcatgttgcatggccagtagccagacattgcta |
40595727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 40600307 - 40600359
Alignment:
| Q |
86 |
gtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccag |
138 |
Q |
| |
|
|||||||| ||||| || |||||||| ||||||| ||||||||||||||||| |
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|
| T |
40600307 |
gtcctaaatatctcactcaatggtgaattgcgtgtcgcatggccagtagccag |
40600359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 43 - 252
Target Start/End: Original strand, 8490588 - 8490797
Alignment:
| Q |
43 |
aacctcaacacatttacctttcctgccacatactaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgat |
142 |
Q |
| |
|
|||||||||| | |||| ||| ||||||| | |||||||| ||| ||||||||||| || ||||||||||||| ||||||||||||| ||| ||| ||| |
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|
| T |
8490588 |
aacctcaacagacgtaccattcttgccacagagtaatcaaagtgttctaaacatctcactcgatggtgaactgcatgttgcatggccaataggcagtgat |
8490687 |
T |
|
| Q |
143 |
tgctacgacgaaaagagcatacaggtgaaccaatcattttggggtatcagaatgacacatcttcccgtctcatcaacacgaaacaagttttttgccgttg |
242 |
Q |
| |
|
||||| | |||||| | | || |||||||||| ||| | || |||| ||||||||||||| ||||| |||| |||||||||| | || |||| |
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|
| T |
8490688 |
tgctatgctgaaaagggtaaactggtgaaccaaacatatcctggcatcaacatgacacatcttcaaatctcaccaaccggaaacaagttgatagcagttg |
8490787 |
T |
|
| Q |
243 |
gctgtgacac |
252 |
Q |
| |
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| |||||||| |
|
|
| T |
8490788 |
gttgtgacac |
8490797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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