View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20573_high_18 (Length: 424)
Name: NF20573_high_18
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 8 - 408
Target Start/End: Complemental strand, 8144421 - 8144023
Alignment:
| Q |
8 |
agattatacttcatatttctctatcacttctatggatatgggtgaatcttcgattttcaacaacacaccaacaaacaaagaaaaatatttctccaataaa |
107 |
Q |
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| T |
8144421 |
agatcatacttcatatttctctatcacttctatggatatgggtgcatcttcgattttcagcaacacaccaacaaacaatgaaaaagatttctcaaaaaaa |
8144322 |
T |
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| Q |
108 |
acttgccaatatctgatgagggtgaatcgtcatcctcttcctcctccaccattgaaaccattctattgtgcaatatgtatggaagataaacctattgnnn |
207 |
Q |
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| T |
8144321 |
acttgccaatatctgatgaggatgaatcgtcatcctcttcctcctccaccattgaaaccatcctattgtgcaatatgtatggaagataaacctattgaaa |
8144222 |
T |
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| Q |
208 |
nnnnnnttgaaagtcaaaactgattataaacctagtgtgctatagcatatcaaacgcacaaatggtttagttgggtatacattttcaacgatttcatttt |
307 |
Q |
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||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
8144221 |
aaaa--ttgaaagtcgaaactgattataaacctattgtgctatagcatatcaaacgcacacatggtttagttgggtatacattttcaacgatttcatttt |
8144124 |
T |
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| Q |
308 |
tgcataacacaccattaattttgaacggtactgtagttgcaaaagtgaggcgaagtggcaaaatatagatttttattgaatgtcggtgtaaaactagttt |
407 |
Q |
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||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8144123 |
tgcataacacaccattaattttgaaaggtactgtagtttcaaaagtgaggcgaagtggcaaaatatagatttttattgaatgtcggtctaaaactagttt |
8144024 |
T |
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