View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20573_high_20 (Length: 420)
Name: NF20573_high_20
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_high_20 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 21 - 420
Target Start/End: Complemental strand, 13744612 - 13744211
Alignment:
| Q |
21 |
taagtaaatgtatcggtctatgttacattattcaacaacaaacgtgaagacgtaatgaatgcccaacttcaaaccaaatgggaggtcaaacctgagagat |
120 |
Q |
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| T |
13744612 |
taagaaaatgtattggtctatgttacattattcaacaacaaacgtgatgacataatcaatgcccaacttcaaaccaaatgggagatcaaacctgagagat |
13744513 |
T |
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| Q |
121 |
gtgaagcaaagtgtgcgtgcatgtatagcacagcatcaaaaacataaatgtgataatgcaatggtcgtagagtaacacagctcttccacaaataaatcat |
220 |
Q |
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| T |
13744512 |
ctgaaccaaagtgtgcgtgcatgtatagcacagcatcaaaaacataaatgtggtaatgcaatggtcgtaaagtaacacagctcttccacaaataattcat |
13744413 |
T |
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| Q |
221 |
tagcaaaaataaagacaagctcaacataaagcaagagaagatctatttaagtaaaatttcacaattggatnnnnnnnngcactaaaacttttgaagttta |
320 |
Q |
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| T |
13744412 |
tggcaaaaataaagacgagttcaacataaagcaagagagggtctatttaagtaaaattacataattggataaaaaaaaccactaaaactatcaaagttta |
13744313 |
T |
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| Q |
321 |
caaaataaacatagacttaaaaatcttaccgaagtcca-gtcagatgatgatccttcttcaatattactgttg-cagcctcacctggacgcttcattact |
418 |
Q |
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| T |
13744312 |
caaaataaacatggacataaaaatcttaccaaagtccaggtcagatgatgatccttcttcaatattactgttgtcagcttcacctggacgcttcattact |
13744213 |
T |
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| Q |
419 |
ga |
420 |
Q |
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| T |
13744212 |
ga |
13744211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 252 - 420
Target Start/End: Original strand, 52268863 - 52269032
Alignment:
| Q |
252 |
caagagaagatctatttaagtaaaatttcacaattggatnnnnnnnngcactaaaacttttgaagtttacaaaataaacatagacttaaaaatcttaccg |
351 |
Q |
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| T |
52268863 |
caagagaagatctatttaagtaaaatttcacaattggataaaaaaa-gcactaaaacttttgaagtttacaaaataaacatagacttaaaaatcttaccc |
52268961 |
T |
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| Q |
352 |
aagtcca-gtcagatgatgatccttcttcaatattactgttg-cagcctcacctggacgcttcattactga |
420 |
Q |
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| T |
52268962 |
aagtccaggtcagatgatgatccttcttcaatattactgttgtcagcttcacctggacgcttcattactga |
52269032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 52268682 - 52268729
Alignment:
| Q |
192 |
gtaacacagctcttccacaaataaatcattagcaaaaataaagacaag |
239 |
Q |
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| T |
52268682 |
gtaacacagctcttccacaaataaatcattagcaaaaataaagacaag |
52268729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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