View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20573_high_21 (Length: 415)

Name: NF20573_high_21
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20573_high_21
NF20573_high_21
[»] chr3 (1 HSPs)
chr3 (1-405)||(37315975-37316379)
[»] chr5 (1 HSPs)
chr5 (25-278)||(19206936-19207188)
[»] chr7 (3 HSPs)
chr7 (127-203)||(38883832-38883908)
chr7 (127-243)||(38893024-38893140)
chr7 (262-356)||(38883967-38884061)
[»] chr1 (6 HSPs)
chr1 (325-371)||(16175294-16175340)
chr1 (301-371)||(33115133-33115203)
chr1 (130-206)||(9700035-9700111)
chr1 (127-207)||(30620974-30621054)
chr1 (160-206)||(16223247-16223293)
chr1 (163-206)||(16183860-16183903)


Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 37316379 - 37315975
Alignment:
Q  1 aattatagtccccactaattggtctttggagcacactattaccaaagactcaattggtcactctaccttaaaaatctatccatggctcgtgaacaactag 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37316379 aattatagtcaccactaattggtctttggagcacactattaccaaagactcaattggtcactctaccttaaaaatctatccatggctcgtgaacaactag 37316280  T
Q  101 gagttctaactgcccttggtgcagccaaaacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgacctttt 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37316279 gagttctaactgcccttgatgcagccaaaacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgacctttt 37316180  T
Q  201 ctgcataccaaatgttaccaagttacttggaagaatatattacacacacccaggtgcactcaagcctggaactttgcctccaaatgtatcagcagcagta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37316179 ctgcataccaaatgttaccaagttacttggaagaatatattacacacacccaggtgcactcaagcctggaactttgcctccaaatgtatcagcagcagta 37316080  T
Q  301 aatggtgttgctctctgtggcactctagcaggccaacttttctttggttggcttggggacaaaatgggaagnnnnnnngtttatggtctaactcttgccc 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  37316079 aatggtgttgctctctgtggcactctagcaggccaacttttctttggttggcttggggacaaaatgggaagaaaaaaagtttatggtctaactcttgccc 37315980  T
Q  401 ctatg 405  Q
     ||||    
T  37315979 ttatg 37315975  T

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Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 25 - 278
Target Start/End: Original strand, 19206936 - 19207188
Alignment:
Q  25 tttggagcacactattaccaaagactcaattggtcactctaccttaaaaatctatccatggctcgtgaacaactaggagttctaactgcccttggtgcag 124  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| || |||||| |||||| ||||||||||||||| | |||  |||||    
T  19206936 tttggagcacactataaccaaagactcaattggtcactccaccttcaaaatcta-ccttggctcatgaacagctaggagttctaacttctcttcatgcag 19207034  T
Q  125 ccaaaacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgaccttttctgcataccaaatgttaccaagtt 224  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  19207035 ccaaaacacaatggtaccttttcacagccatcataattgctggtatgggattctgcacagatgcatatgaccttttctgcataccaaatgttaccaagtt 19207134  T
Q  225 acttggaagaatatattacacacacccaggtgcactcaagcctggaactttgcc 278  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  19207135 acttggaagaatatactacacacacccagatgcactcaagcctggaactttgcc 19207188  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 38883832 - 38883908
Alignment:
Q  127 aaaacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgaccttttctg 203  Q
    ||||||||||||||||||||||| || ||||| || ||||||||||||||||| |||||||| ||||| || |||||    
T  38883832 aaaacacaatggtaccatttcactgcaatcatcatagctggtatgggattctttacagatgcctatgatctgttctg 38883908  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 127 - 243
Target Start/End: Original strand, 38893024 - 38893140
Alignment:
Q  127 aaaacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgaccttttctgcataccaaatgttaccaagttac 226  Q
    ||||| |||||||| || |||||||| ||||| |||||||| ||||||||||| || ||||| ||||| || ||||||||| |   |||||||||||| |    
T  38893024 aaaacgcaatggtatcacttcacagcaatcatcattgctggaatgggattctttactgatgcctatgatctgttctgcatatcccttgttaccaagttgc 38893123  T
Q  227 ttggaagaatatattac 243  Q
    | ||| | |||||||||    
T  38893124 tgggacgcatatattac 38893140  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 356
Target Start/End: Original strand, 38883967 - 38884061
Alignment:
Q  262 aagcctggaactttgcctccaaatgtatcagcagcagtaaatggtgttgctctctgtggcactctagcaggccaacttttctttggttggcttgg 356  Q
    ||||| || || |||||||| ||||||||||| || || |||||||| ||| ||||||| || ||  |||| |||||||||||||| ||||||||    
T  38883967 aagcccggtacattgcctcccaatgtatcagctgctgtgaatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttgg 38884061  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 325 - 371
Target Start/End: Complemental strand, 16175340 - 16175294
Alignment:
Q  325 ctagcaggccaacttttctttggttggcttggggacaaaatgggaag 371  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||    
T  16175340 ctagcaggccaattattctttggttggcttggggacaaaatgggaag 16175294  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 301 - 371
Target Start/End: Original strand, 33115133 - 33115203
Alignment:
Q  301 aatggtgttgctctctgtggcactctagcaggccaacttttctttggttggcttggggacaaaatgggaag 371  Q
    |||||||||||| || ||||  | || ||||| ||||||||||||||||||||||| ||||||||||||||    
T  33115133 aatggtgttgctttcagtggagcactggcaggacaacttttctttggttggcttggtgacaaaatgggaag 33115203  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 9700111 - 9700035
Alignment:
Q  130 acacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgaccttttctgcat 206  Q
    ||||||||||||||| | ||||| ||  |||||||||| |||||||||||||| ||||| ||||| || ||||||||    
T  9700111 acacaatggtaccatgtaacagctatagtaattgctggcatgggattcttcactgatgcctatgatctgttctgcat 9700035  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 30621054 - 30620974
Alignment:
Q  127 aaaacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgaccttttctgcata 207  Q
    |||||||||||||||||||||||||| ||  | || ||||| ||||| |||||||| |||||||| || || |||||||||    
T  30621054 aaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctattctgcata 30620974  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 16223247 - 16223293
Alignment:
Q  160 attgctggtatgggattcttcacagatgcatatgaccttttctgcat 206  Q
    |||||||| |||||||||||||| ||||||||||| |||||||||||    
T  16223247 attgctggaatgggattcttcactgatgcatatgatcttttctgcat 16223293  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 16183860 - 16183903
Alignment:
Q  163 gctggtatgggattcttcacagatgcatatgaccttttctgcat 206  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||    
T  16183860 gctggaatgggattcttcactgatgcatatgatcttttctgcat 16183903  T

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