View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20573_high_23 (Length: 397)

Name: NF20573_high_23
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20573_high_23
NF20573_high_23
[»] chr5 (5 HSPs)
chr5 (14-373)||(19209534-19209896)
chr5 (140-217)||(12265388-12265465)
chr5 (209-288)||(19078982-19079060)
chr5 (209-288)||(19079226-19079304)
chr5 (221-283)||(23213355-23213416)
[»] chr7 (3 HSPs)
chr7 (32-281)||(6454726-6454977)
chr7 (210-280)||(979455-979525)
chr7 (209-247)||(41572958-41572996)
[»] chr1 (4 HSPs)
chr1 (136-266)||(1991832-1991960)
chr1 (225-276)||(7062495-7062546)
chr1 (249-288)||(14150524-14150563)
chr1 (209-282)||(13270882-13270954)
[»] chr3 (1 HSPs)
chr3 (183-283)||(8677860-8677960)
[»] chr4 (1 HSPs)
chr4 (212-281)||(3329751-3329820)
[»] chr6 (1 HSPs)
chr6 (209-281)||(31130948-31131020)
[»] chr8 (1 HSPs)
chr8 (214-246)||(9984771-9984803)
[»] chr2 (1 HSPs)
chr2 (212-288)||(17862956-17863031)


Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 14 - 373
Target Start/End: Complemental strand, 19209896 - 19209534
Alignment:
Q  14 gaagaaactggatgatcgatatacaagttcatatcatgcttcagacgtaccatatgttcctttgtatatgtatactagttagtcagtatgcatggtgttc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| || |||||||    
T  19209896 gaagaaactggatgatcgatatacaagttcatatcatgcttcagacgtaccatatgttcctttgtatttgtatactagttagtcactatacaaggtgttc 19209797  T
Q  114 atatgaaattcttctattatgt---tttgttaaaatgtacatatttgtctgatatatgaaagcatgaattcgatgtaattcattcagacgaaatttgctt 210  Q
    |||| |||||||||||||||||   ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19209796 atataaaattcttctattatgtatatttgttaaaatgtacgtatttgtctgatatatgaaagcaagaattcgatgtaattcattcagacgaaatttgctt 19209697  T
Q  211 atgttgtaactttaatgtatcaagtactaagtttaatgtgtatgttaaatattctatataaatttagtatgggagttatactatcttaggaagcttaacg 310  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||    
T  19209696 atgttgtaactttaatgtatcaaatactaagtttaatgtgtatgttaaatattctagataaatttagtatgggagctacactatcttaggaagcttaacg 19209597  T
Q  311 aatatgtcataaaccaaaacttcctcatttatgttgtttgaactcttctaaggtaagttcaaa 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19209596 aatatgtcataaaccaaaacttcctcatttatgttgtttgaactcttctaaggtaagttcaaa 19209534  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 12265388 - 12265465
Alignment:
Q  140 ttaaaatgtacatatttgtctgatatatgaaagcatgaattcgatgtaattcattcagacgaaatttgcttatgttgt 217  Q
    ||||||||||| || ||||||||||||| |||| ||||||| ||||| ||||||||| || |||||||||||||||||    
T  12265388 ttaaaatgtacgtaattgtctgatatattaaagtatgaatttgatgtgattcattcatacaaaatttgcttatgttgt 12265465  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 288
Target Start/End: Original strand, 19078982 - 19079060
Alignment:
Q  209 ttatgttgtaactttaatgtatcaagtactaagtttaatgtgtatgttaaatattctatataaatttagtatgggagtta 288  Q
    ||||||||||| ||||||||||| ||||||||||| || |   ||| ||||||||||| |||||||||||||||| ||||    
T  19078982 ttatgttgtaattttaatgtatccagtactaagtt-aacgcacatgctaaatattctagataaatttagtatgggtgtta 19079060  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 288
Target Start/End: Original strand, 19079226 - 19079304
Alignment:
Q  209 ttatgttgtaactttaatgtatcaagtactaagtttaatgtgtatgttaaatattctatataaatttagtatgggagtta 288  Q
    ||||||||||| ||||||||||| ||||||||||| || |   ||| ||||||||||| |||||||||||||||| ||||    
T  19079226 ttatgttgtaattttaatgtatccagtactaagtt-aacgcacatgctaaatattctagataaatttagtatgggtgtta 19079304  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 283
Target Start/End: Complemental strand, 23213416 - 23213355
Alignment:
Q  221 tttaatgtatcaagtactaagtttaatgtgtatgttaaatattctatataaatttagtatggg 283  Q
    ||||||||||||| ||||||||| |||||  ||| ||||||||||| ||||||||||||||||    
T  23213416 tttaatgtatcaaatactaagtt-aatgtacatgctaaatattctagataaatttagtatggg 23213355  T

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Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 32 - 281
Target Start/End: Original strand, 6454726 - 6454977
Alignment:
Q  32 atatacaagttcatatcatgcttcagacgtaccatatgttcctttgtatatgtatactagttagtcagtatgcatggtgttcatatgaaa-ttcttctat 130  Q
    ||||||| ||||||  |||| |||||||||| ||  ||||| ||||||| ||||||||||||| | ||||| |||| |  ||| |||||| ||| | |||    
T  6454726 atatacatgttcatgccatgtttcagacgtagcaggtgttcttttgtatttgtatactagttaattagtatacatgat--tcagatgaaaattcatgtat 6454823  T
Q  131 tatgttt---tgttaaaatgtacatatttgtctgatatatgaaagcatgaattcgatgtaattcattcagacgaaatttgcttatgttgtaactttaatg 227  Q
    ||||| |   || |||||||||  ||| ||| | |||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||| ||    
T  6454824 tatgtatgtctgataaaatgtatgtatatgtttaatatatgaaatcatgaatttgatgtaattcattcagaagaaatttgcttatgttgtaattttattg 6454923  T
Q  228 tatcaagtactaagtttaatgtgtatgttaaatattctatataaatttagtatg 281  Q
    ||||||||||||||||||| | ||||| ||||||||||| ||||||||||||||    
T  6454924 tatcaagtactaagtttaacgcgtatgctaaatattctagataaatttagtatg 6454977  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 280
Target Start/End: Complemental strand, 979525 - 979455
Alignment:
Q  210 tatgttgtaactttaatgtatcaagtactaagtttaatgtgtatgttaaatattctatataaatttagtat 280  Q
    |||||||||| ||||||||||||| ||||||||||| || | ||| ||||||||||| |||||||||||||    
T  979525 tatgttgtaattttaatgtatcaaatactaagtttattgcgcatgctaaatattctagataaatttagtat 979455  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 41572958 - 41572996
Alignment:
Q  209 ttatgttgtaactttaatgtatcaagtactaagtttaat 247  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  41572958 ttatgttgtaattttaatgtatctagtactaagtttaat 41572996  T

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Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 136 - 266
Target Start/End: Original strand, 1991832 - 1991960
Alignment:
Q  136 tttgttaaaatgtacatatttgtctgatatatgaaagcatgaattcgatgtaattcattcagacgaaatttgcttatgttgtaactttaatgtatcaagt 235  Q
    ||||||||||||||  |||| ||||||||||||||||||||| || |||||||||||||||||||||  ||| ||||||||||| ||||||||||| |||    
T  1991832 tttgttaaaatgtatgtattcgtctgatatatgaaagcatgattttgatgtaattcattcagacgaa--ttgtttatgttgtaattttaatgtatctagt 1991929  T
Q  236 actaagtttaatgtgtatgttaaatattcta 266  Q
    ||||| ||||| |||||||||||||||||||    
T  1991930 actaactttaacgtgtatgttaaatattcta 1991960  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 276
Target Start/End: Complemental strand, 7062546 - 7062495
Alignment:
Q  225 atgtatcaagtactaagtttaatgtgtatgttaaatattctatataaattta 276  Q
    ||||||||||||||| |||||| |||| ||||||||||| || |||||||||    
T  7062546 atgtatcaagtactacgtttaacgtgtgtgttaaatattttagataaattta 7062495  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 14150524 - 14150563
Alignment:
Q  249 tgtatgttaaatattctatataaatttagtatgggagtta 288  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  14150524 tgtatgctaaatattctagataaatttagtatgggagtta 14150563  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 282
Target Start/End: Original strand, 13270882 - 13270954
Alignment:
Q  209 ttatgttgtaactttaatgtatcaagtactaagtttaatgtgtatgttaaatattctatataaatttagtatgg 282  Q
    ||||||||||| ||||||||||| |||||||| ||||||   ||| | |||||||||| | |||||||||||||    
T  13270882 ttatgttgtaattttaatgtatctagtactaattttaataattat-tcaaatattctagacaaatttagtatgg 13270954  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 183 - 283
Target Start/End: Complemental strand, 8677960 - 8677860
Alignment:
Q  183 atgtaattcattcagacgaaatttgcttatgttgtaactttaatgtatcaagtactaagtttaatgtgtatgttaaatattctatataaatttagtatgg 282  Q
    |||||||| |||| | ||||||||| ||||||||||| |||||||||||||||||||||||||| |   ||| ||||||||||| |||||||||||||||    
T  8677960 atgtaatttattcggtcgaaatttgtttatgttgtaattttaatgtatcaagtactaagtttaacgcacatgctaaatattctagataaatttagtatgg 8677861  T
Q  283 g 283  Q
    |    
T  8677860 g 8677860  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 212 - 281
Target Start/End: Original strand, 3329751 - 3329820
Alignment:
Q  212 tgttgtaactttaatgtatcaagtactaagtttaatgtgtatgttaaatattctatataaatttagtatg 281  Q
    |||||||| ||||||||||||| |||||| ||||||||||||| ||||||||||| ||||||||||||||    
T  3329751 tgttgtaattttaatgtatcaattactaattttaatgtgtatgataaatattctagataaatttagtatg 3329820  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 281
Target Start/End: Original strand, 31130948 - 31131020
Alignment:
Q  209 ttatgttgtaactttaatgtatcaagtactaagtttaatgtgtatgttaaatattctatataaatttagtatg 281  Q
    ||||||||||| ||||||||||| | ||||| |||||| |   ||| ||||||||||| ||||||||||||||    
T  31130948 ttatgttgtaattttaatgtatctaatactaggtttaacgcacatgctaaatattctagataaatttagtatg 31131020  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 9984771 - 9984803
Alignment:
Q  214 ttgtaactttaatgtatcaagtactaagtttaa 246  Q
    |||||| ||||||||||||||||||||||||||    
T  9984771 ttgtaattttaatgtatcaagtactaagtttaa 9984803  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 288
Target Start/End: Complemental strand, 17863031 - 17862956
Alignment:
Q  212 tgttgtaactttaatgtatcaagtactaagtttaatgtgtatgttaaatattctatataaatttagtatgggagtta 288  Q
    |||||||| ||||||||||| |||| ||||||||||  | ||| ||||||||||| |  ||||||||||||| ||||    
T  17863031 tgttgtaattttaatgtatccagtagtaagtttaatacgcatgctaaatattctaga-caatttagtatgggtgtta 17862956  T

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