View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20573_high_27 (Length: 362)
Name: NF20573_high_27
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_high_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 11 - 344
Target Start/End: Original strand, 34344744 - 34345077
Alignment:
| Q |
11 |
agaatatccaaggtggctccaaatttgtctttgaaggaggatgcaaaggtttgaatagaatcagcatctgagacatcaaggactagaaagtgaacatgat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34344744 |
agaatatccaaggtggctccaaatttgtctttgaaggaggatgcaaaggttttaatagaatcagcatctgagacatcaaggactagaaagtgaacatgat |
34344843 |
T |
|
| Q |
111 |
gatgaggtgcaacaaggcctaattgtgctcgaatcatctccacagcatcctctcctttcttcttgtctctagcagttaacactacactcagtcccaactc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34344844 |
gatgaggtgcaacaaggcctaattgtgctcgaattctctccacagcatcctctcctttcttcttgtctctagcagttaacactacactcagtcccaactc |
34344943 |
T |
|
| Q |
211 |
agcaaaacgtttcacaagagcaaacccaatgcccttgtttcctcctgtcaccaccgccaccgtctccttcgaccaccaccttcattcattcgttacatat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34344944 |
agcaaaacgtttcacaagagcaaacccaatgcccttgtttcctcctgtcaccaccgccaccgtctccttcgaccaccaccttcattcattcgttacatat |
34345043 |
T |
|
| Q |
311 |
atataaaagcaaattaattaaacaaatgtatgac |
344 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
34345044 |
atataaaagcaaattaattaaacacatgtatgac |
34345077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University