View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20573_high_32 (Length: 343)
Name: NF20573_high_32
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_high_32 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 8223260 - 8222939
Alignment:
| Q |
1 |
attacattgacttgccgtcgtttaacaagtttcattgtcgttttagtgtccactgagatctatctactgttttgattcattcattcatctcaagaaccct |
100 |
Q |
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|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||| |
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| T |
8223260 |
attacattgacttgacgtcgtttaacaagtttcactgtcgttttagtgtccactgagatctatctcc-----tgattgattcattcatctcaagaaccct |
8223166 |
T |
|
| Q |
101 |
aacctgcaagcaatgtttttgaatcaatggtgggacccaaaaagcacttccttccaataatcttcatcacactcattgcattcatcttctacacttttca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8223165 |
aacctgcaagcaatgtttttgaatcaatggtgggacccaaaaagcacttccttccaataatcttcatcacactcattgcattcatcttctatacttttca |
8223066 |
T |
|
| Q |
201 |
caactcttctctcccatcttcaataaccgaatcaaaccctaatttcacagtaaaatccccaattcaaataaaccctaattcaataatttcccccaatttc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8223065 |
caactcttctctcccatcttcaataaccgaatcaaaccctaatttcacagtaaaatccccaattcaaataaaccctaattcaacaatttcccccaatttc |
8222966 |
T |
|
| Q |
301 |
acgttccttatcaaagttctcgccttt |
327 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
8222965 |
acgttccttatcaaagttctcgccttt |
8222939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 297
Target Start/End: Complemental strand, 18343482 - 18343417
Alignment:
| Q |
232 |
tcaaaccctaatttcacagtaaaatccccaattcaaataaaccctaattcaataatttcccccaat |
297 |
Q |
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||||||||| ||||||| |||||||||||||||||||||||| ||||| | ||||||||||||| |
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| T |
18343482 |
tcaaaccctgatttcaccctaaaatccccaattcaaataaaccttaatttcaaaatttcccccaat |
18343417 |
T |
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