View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20573_high_36 (Length: 332)
Name: NF20573_high_36
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 58 - 316
Target Start/End: Complemental strand, 46873354 - 46873096
Alignment:
| Q |
58 |
tattttatatgattgaacaatataaaacagtagaattatatgataaaaccaaaaccaataatcaaaatgagttattgttaccttcttcaccatgagcaaa |
157 |
Q |
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| T |
46873354 |
tattttatatgattgaacaatataaaacagtagaattatatgataaaaccaaaaccaataatcaaaatgagttattgttaccttcttcaccatgagcaaa |
46873255 |
T |
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| Q |
158 |
gtgacaattctttccaaaggaacaatatcccgtatccttccacttgagacacagcttagtcttccgataagtgcccctaaattgtgcaggatcttcatga |
257 |
Q |
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| T |
46873254 |
gtgacaattctttccaaaggaacaatatcccgtatccttccacttgagacacagcttagtcttccgataagtgcccctaaattgtgcaggatcttcatga |
46873155 |
T |
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| Q |
258 |
aggaatttacacttatctccatagggacatttctccccattgcaatacttcttgcacag |
316 |
Q |
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| T |
46873154 |
aggaatttacacttatctccatagggacatttctccccattgcaatacttcttgcacag |
46873096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 58 - 231
Target Start/End: Complemental strand, 46890766 - 46890593
Alignment:
| Q |
58 |
tattttatatgattgaacaatataaaacagtagaattatatgataaaaccaaaaccaataatcaaaatgagttattgttaccttcttcaccatgagcaaa |
157 |
Q |
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| T |
46890766 |
tattttatataattaaacaaaataaagcaatagaattatatgataaaaccaaaaccaataagcaaaatgagttattgttaccttcttcaccatgagcaaa |
46890667 |
T |
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| Q |
158 |
gtgacaattctttccaaaggaacaatatcccgtatccttccacttgagacacagcttagtcttccgataagtgc |
231 |
Q |
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| T |
46890666 |
gagacagttcattccaaaggaacaatatcctgtatgcttccaattgcgacacagcttagtcttccgataagtgc |
46890593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 232 - 316
Target Start/End: Complemental strand, 46890502 - 46890418
Alignment:
| Q |
232 |
ccctaaattgtgcaggatcttcatgaaggaatttacacttatctccatagggacatttctccccattgcaatacttcttgcacag |
316 |
Q |
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||||||| |||||||||||||||||||||||| |||| ||||||||||| ||||||| ||||||||||||||| ||||||||||| |
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| T |
46890502 |
ccctaaactgtgcaggatcttcatgaaggaatatacagttatctccatatggacattcctccccattgcaataattcttgcacag |
46890418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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