View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20573_high_38 (Length: 322)

Name: NF20573_high_38
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20573_high_38
NF20573_high_38
[»] chr8 (3 HSPs)
chr8 (1-322)||(37928668-37928976)
chr8 (1-322)||(31686658-31686978)
chr8 (184-225)||(33282457-33282498)
[»] chr1 (8 HSPs)
chr1 (42-261)||(36098891-36099111)
chr1 (176-261)||(33136516-33136601)
chr1 (196-261)||(34703907-34703972)
chr1 (188-240)||(25392741-25392793)
chr1 (56-108)||(32159831-32159883)
chr1 (188-241)||(31069277-31069330)
chr1 (57-102)||(40708729-40708774)
chr1 (188-240)||(22583607-22583659)
[»] chr5 (6 HSPs)
chr5 (39-261)||(27482939-27483161)
chr5 (44-228)||(25325766-25325950)
chr5 (191-261)||(18967462-18967532)
chr5 (184-261)||(12863901-12863978)
chr5 (188-261)||(14921157-14921230)
chr5 (184-261)||(12831926-12832003)
[»] chr6 (6 HSPs)
chr6 (56-264)||(32197102-32197310)
chr6 (44-225)||(2682407-2682588)
chr6 (181-261)||(12687796-12687876)
chr6 (181-261)||(27104882-27104962)
chr6 (181-261)||(27146691-27146771)
chr6 (50-102)||(29599430-29599481)
[»] chr4 (4 HSPs)
chr4 (41-261)||(9830994-9831214)
chr4 (184-261)||(20510002-20510079)
chr4 (186-261)||(5760609-5760684)
chr4 (184-240)||(22652917-22652973)
[»] chr3 (3 HSPs)
chr3 (166-264)||(20017817-20017915)
chr3 (56-108)||(4740761-4740813)
chr3 (186-261)||(18689941-18690016)
[»] chr2 (6 HSPs)
chr2 (182-264)||(24739423-24739505)
chr2 (44-105)||(30505480-30505541)
chr2 (185-261)||(129539-129615)
chr2 (189-261)||(841966-842038)
chr2 (184-258)||(30505327-30505401)
chr2 (52-108)||(27708467-27708523)
[»] chr7 (7 HSPs)
chr7 (52-108)||(23710755-23710811)
chr7 (56-108)||(47543184-47543236)
chr7 (184-258)||(26569317-26569390)
chr7 (182-228)||(30295508-30295554)
chr7 (188-261)||(10275088-10275161)
chr7 (184-261)||(41528995-41529072)
chr7 (188-240)||(12092307-12092359)
[»] scaffold0094 (1 HSPs)
scaffold0094 (185-259)||(25335-25409)


Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 37928976 - 37928668
Alignment:
Q  1 ttgattaaaatgatcttgctcctgagcaggaatgaacactgagatgccaagccatctataaatgaaatgccaaacagccccaaaaatattacaatgtaaa 100  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37928976 ttgattaaaatgatcttgctcctgagcaggaatgaccgctgagatgccaagccatctataaatgaaatgccaaacagccccaaaaatattacaatgtaaa 37928877  T
Q  101 aacaagtgctgggaagattcgattgaaccacacccagccacacacatccttgagtcacgatcaagaacaccatgccgatgcaaattgtcctttgtaggca 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37928876 aacaagtgctgggaagattcgatcgaaccacacccagccacacacatccttgagtcacgatcaagaacaccacgccgatgcaaattgtcctttgtaggca 37928777  T
Q  201 acctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgccacaacgagtcaacaggaaccgatgaaacaagtggaggatg 300  Q
    |||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37928776 acctgtctcggaacaaacgccaagcaaaaagcacaac-------------tctttatgccacaacgagtcaacaggaaccgatgaaacaagtggaggatg 37928690  T
Q  301 aactgataggaaattatatgca 322  Q
    ||||||||||||||||||||||    
T  37928689 aactgataggaaattatatgca 37928668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 31686658 - 31686978
Alignment:
Q  1 ttgattaaaatgatcttgctcctgagcaggaatgaacactgagatgccaagccatctataaatgaaatgccaaacagccccaaaaatattacaatgtaaa 100  Q
    ||||||||||||||||||| | |||||| |||||| | |||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||  ||||    
T  31686658 ttgattaaaatgatcttgcacgtgagcaagaatgaccgctgagatgccaagccacctataaatgaaatgccaaacaaccccaaaaattttacaaaataaa 31686757  T
Q  101 aacaagtgctgggaagattcgattgaaccacacccagccacacacatccttgagtcacgatcaagaacaccatgccgatgcaaattgtcctttgtaggca 200  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| |||||||||    
T  31686758 aacaagtggtgggaagattcgatcgaaccacacccagccacacacatccttgcgtcacgatcaagaacaccacgccaatgcaaattgtcc-ttgtaggca 31686856  T
Q  201 acctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgccacaacgagtcaacaggaaccgatgaaacaagtggaggatg 300  Q
     | |||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||| |||  ||||||||||||||||||||| |||||||||    
T  31686857 gcttgtctcggaacaaacgtcaagcaaacagcacaacctttaacaggacatctttatgccacatcgaagcaacaggaaccgatgaaacaaatggaggatg 31686956  T
Q  301 aactgataggaaattatatgca 322  Q
    | ||||||||||||||||||||    
T  31686957 agctgataggaaattatatgca 31686978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 33282498 - 33282457
Alignment:
Q  184 attgtcctttgtaggcaacctgtctcggaacaaacgccaagc 225  Q
    ||||||||| ||||||||||||||||| ||||| ||||||||    
T  33282498 attgtccttcgtaggcaacctgtctcgaaacaaccgccaagc 33282457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 42 - 261
Target Start/End: Original strand, 36098891 - 36099111
Alignment:
Q  42 agatgccaagccatctataaatgaaatgccaaacag-ccccaaaaatattacaatgtaaaaacaagtgctgggaagattcgattgaaccacacccagcca 140  Q
    ||||||||||||| ||||| || || |||||||| | |||||||| |||||||||||||||| |||||||| || ||||| | |||| ||||||| ||||    
T  36098891 agatgccaagccacctatatataaagtgccaaactgaccccaaaagtattacaatgtaaaaataagtgctgagatgattcaactgaaacacaccctgcca 36098990  T
Q  141 cacacatccttgagtcacgatcaagaacaccatgccgatgcaaattgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctt 240  Q
    |||| | |||||| |||||| ||||||||||| |  | |||| |||||||||||||||||||||||||| ||| || ||||||||||| |  ||||||||    
T  36098991 cacaaaaccttgaatcacgaccaagaacaccacgatgttgcagattgtcctttgtaggcaacctgtctcagaataaccgccaagcaaacaaaacaacctt 36099090  T
Q  241 taacgggacatctttatgcca 261  Q
     |  |||||||| ||||||||    
T  36099091 aagagggacatccttatgcca 36099111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 261
Target Start/End: Original strand, 33136516 - 33136601
Alignment:
Q  176 cgatgcaaattgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 261  Q
    |||| |||||||||||| ||||||||||  || ||||||| |||||||||||| || |||||||| || || | ||| ||||||||    
T  33136516 cgatacaaattgtccttagtaggcaaccaatcacggaacagacgccaagcaaagagaacaaccttcaatggaatatccttatgcca 33136601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 261
Target Start/End: Original strand, 34703907 - 34703972
Alignment:
Q  196 aggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 261  Q
    ||||||||| |  |||||||||||||||||||| |  ||||||||||| || ||||||||||||||    
T  34703907 aggcaacctattccggaacaaacgccaagcaaataaaacaacctttaaaggaacatctttatgcca 34703972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 25392741 - 25392793
Alignment:
Q  188 tcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctt 240  Q
    ||||||||||||||||| || |||||||| ||||||||||| | |||||||||    
T  25392741 tcctttgtaggcaacctatcccggaacaaccgccaagcaaacaacacaacctt 25392793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 32159883 - 32159831
Alignment:
Q  56 ctataaatgaaatgccaaacagccccaaaaatattacaatgtaaaaacaagtg 108  Q
    ||||||||||| ||||||||||  ||||||| ||||||||||||||| |||||    
T  32159883 ctataaatgaagtgccaaacagatccaaaaaaattacaatgtaaaaataagtg 32159831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 31069330 - 31069277
Alignment:
Q  188 tcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaaccttt 241  Q
    |||||||| |||||||| ||||| |||| || ||||||||||||||||| ||||    
T  31069330 tcctttgtgggcaacctatctcgaaacagacaccaagcaaaaagcacaaacttt 31069277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 40708729 - 40708774
Alignment:
Q  57 tataaatgaaatgccaaacagccccaaaaatattacaatgtaaaaa 102  Q
    |||||||||| |||||||| | ||||||| ||||||||||||||||    
T  40708729 tataaatgaagtgccaaacggacccaaaactattacaatgtaaaaa 40708774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 22583607 - 22583659
Alignment:
Q  188 tcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctt 240  Q
    ||||||||| | ||||| ||||| |||| ||| ||||||||||||||||||||    
T  22583607 tcctttgtatgaaacctatctcgaaacagacgtcaagcaaaaagcacaacctt 22583659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 39 - 261
Target Start/End: Original strand, 27482939 - 27483161
Alignment:
Q  39 ctgagatgccaagccatctataaatgaaatgccaaacagccccaaaaatattacaatgtaaaaacaagtgctgggaagattcgattgaaccacacccagc 138  Q
    ||||||||||||||||||||||||| ||||||||||| |  ||||||||| |||  ||||| || | |||||  || ||||| ||||||||||| || ||    
T  27482939 ctgagatgccaagccatctataaataaaatgccaaactgaaccaaaaatactactgtgtaagaataggtgcttagatgattcaattgaaccacaacctgc 27483038  T
Q  139 cacacacatccttgagtcacgatcaagaacaccatgccgatgcaaattgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacc 238  Q
     ||||| | |||||| || ||||||| ||||||| |  ||||||  ||||| ||||||||||||||||| ||||| || |||||||| || |  ||||||    
T  27483039 gacacaaagccttgaatctcgatcaataacaccacgatgatgcaggttgtcttttgtaggcaacctgtcacggaataaccgccaagcgaacaaaacaacc 27483138  T
Q  239 tttaacgggacatctttatgcca 261  Q
    || |  |||||||||||||||||    
T  27483139 ttcagagggacatctttatgcca 27483161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 44 - 228
Target Start/End: Complemental strand, 25325950 - 25325766
Alignment:
Q  44 atgccaagccatctataaatgaaatgccaaacagccccaaaaatattacaatgtaaaaacaagtgctgggaagattcgattgaaccacacccagccacac 143  Q
    ||||| ||||| || |||||  |||| ||||| | ||||||||||||||||||||| || || || ||||| ||||| |  |||||||||||||||||||    
T  25325950 atgcccagccacctgtaaatataatgtcaaactgacccaaaaatattacaatgtaagaataaatgatgggaggattcaaccgaaccacacccagccacac 25325851  T
Q  144 acatccttgagtcacgatcaagaacaccatgccgatgcaaattgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaa 228  Q
    ||||||| || ||| |||||| ||||||  |  ||  |||| |||| |||||||||||| ||||||  ||||| |||||||||||    
T  25325850 acatcctagaatcatgatcaataacaccgcgatgaaacaaaatgtcttttgtaggcaacttgtctctaaacaaccgccaagcaaa 25325766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 261
Target Start/End: Complemental strand, 18967532 - 18967462
Alignment:
Q  191 tttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 261  Q
    ||||| |||||||| ||||| |||| |||||||||||||||||||||||| |  |||| ||| ||||||||    
T  18967532 tttgttggcaacctatctcgaaacatacgccaagcaaaaagcacaaccttcatagggatatccttatgcca 18967462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 12863901 - 12863978
Alignment:
Q  184 attgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 261  Q
    ||||||||| ||||| || || || |||||||||||||||||||| |  ||||||||||| || ||||| ||||||||    
T  12863901 attgtccttagtaggtaatctatcccggaacaaacgccaagcaaacaagacaacctttaaaggaacatccttatgcca 12863978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 261
Target Start/End: Original strand, 14921157 - 14921230
Alignment:
Q  188 tcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 261  Q
    ||||| || ||||||||||| || |||||||| ||||| ||||| ||||||||||  |||||||| ||||||||    
T  14921157 tccttagttggcaacctgtcacgaaacaaacgtcaagcgaaaagaacaacctttagagggacatccttatgcca 14921230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 12831926 - 12832003
Alignment:
Q  184 attgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 261  Q
    ||||||||| ||||| || || || |||||||||| ||||||||| |  ||||||||||| || ||||| ||||||||    
T  12831926 attgtccttagtaggtaatctatcccggaacaaacaccaagcaaacaagacaacctttaaaggaacatccttatgcca 12832003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 264
Target Start/End: Original strand, 32197102 - 32197310
Alignment:
Q  56 ctataaatgaaatgccaaacagccccaaaaatattacaatgtaaaaacaagtgctgggaagattcgattgaaccacacccagccacacacatccttgagt 155  Q
    ||||||||||| ||||||||||  ||||||| ||||||||||||||| ||||| || || ||||| |  || ||||| |||| |||||||| ||| ||      
T  32197102 ctataaatgaagtgccaaacagaaccaaaaaaattacaatgtaaaaataagtgttgagacgattccaacgatccacaaccagacacacacaacctggatg 32197201  T
Q  156 cacgatcaagaacaccatgccgatgcaaattgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatcttt 255  Q
    |  |||||| ||| ||| | ||  | ||||| || ||||| ||||| || ||| | ||||| ||||| ||||| ||||||||||| ||||| ||||||||    
T  32197202 cttgatcaataacgccacgacggagtaaattatcttttgtgggcaatctatcttgaaacaagcgccacgcaaagagcacaaccttcaacggaacatcttt 32197301  T
Q  256 atgccacaa 264  Q
    |||||||||    
T  32197302 atgccacaa 32197310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 225
Target Start/End: Complemental strand, 2682588 - 2682407
Alignment:
Q  44 atgccaagccatctataaatgaaatgccaaacagccccaaaaatattacaatgtaaaaacaagtgctgggaagattcgattgaaccacacccagccacac 143  Q
    |||||||||||  ||||||| || |||||||||| |||||||| ||||||||||||||  || || ||||| |||||   | ||||||| ||||||||||    
T  2682588 atgccaagccacttataaattaagtgccaaacagacccaaaaacattacaatgtaaaactaaatgatgggatgattcttctaaaccacatccagccacac 2682489  T
Q  144 acatccttgagtcacgatcaagaacaccatgccgatgcaaattgtcctttgtaggcaacctgtctcggaacaaacgccaagc 225  Q
    |||| || || |||   ||||  |||||  |  || |||||||||| ||||| ||||||||||||||||| || ||||||||    
T  2682488 acattctggaatcattttcaatgacacctcgatgaagcaaattgtcttttgttggcaacctgtctcggaataaccgccaagc 2682407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 12687876 - 12687796
Alignment:
Q  181 caaattgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 261  Q
    |||||||||||||||||| || ||||  | || ||| ||||||||||| | ||| |||||||| || ||||| ||||||||    
T  12687876 caaattgtcctttgtaggtaatctgttcctgagcaaccgccaagcaaacaacaccacctttaaaggaacatccttatgcca 12687796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 27104962 - 27104882
Alignment:
Q  181 caaattgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 261  Q
    |||||||||||||||||| || |||   |||| ||| ||||||||||| | ||| |||||||| || ||||| ||||||||    
T  27104962 caaattgtcctttgtaggtaatctgctccggagcaaccgccaagcaaacaacaccacctttaaaggaacatccttatgcca 27104882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 27146771 - 27146691
Alignment:
Q  181 caaattgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 261  Q
    |||||||||||||||||| || |||   |||| ||| ||||||||||| | ||| |||||||| || ||||| ||||||||    
T  27146771 caaattgtcctttgtaggtaatctgctccggagcaaccgccaagcaaacaacaccacctttaaaggaacatccttatgcca 27146691  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 29599430 - 29599481
Alignment:
Q  50 agccatctataaatgaaatgccaaacagccccaaaaatattacaatgtaaaaa 102  Q
    ||||| ||||||||||| |||||||| | ||||||| ||||||||||||||||    
T  29599430 agccacctataaatgaa-tgccaaacggacccaaaactattacaatgtaaaaa 29599481  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 261
Target Start/End: Complemental strand, 9831214 - 9830994
Alignment:
Q  41 gagatgccaagccatctataaatgaaatgccaaacagccccaaaaatattacaatgtaaaaacaagtgctgggaagattcgattgaaccacacccagcca 140  Q
    |||||||||||||| |||||||| || ||||||||   || |||| |||||||||||||||| |||||||  || ||||| | |||| |||| || ||||    
T  9831214 gagatgccaagccagctataaataaagtgccaaactaaccgaaaagtattacaatgtaaaaataagtgctatgatgattcaactgaatcacaacctgcca 9831115  T
Q  141 cacacatccttgagtcacgatcaagaacaccatgccgatgcaaattgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctt 240  Q
    |||  | |||||| ||| || ||||||||||| |  | |||| ||||||||||||||||||| |||| || || ||   ||||||||| |  ||||||||    
T  9831114 cacgaaaccttgaatcatgaccaagaacaccacgatggtgcagattgtcctttgtaggcaacatgtcacgaaataactaccaagcaaataaaacaacctt 9831015  T
Q  241 taacgggacatctttatgcca 261  Q
     |  |||||||| ||||||||    
T  9831014 cagagggacatccttatgcca 9830994  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 261
Target Start/End: Complemental strand, 20510079 - 20510002
Alignment:
Q  184 attgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 261  Q
    ||||||||| ||||| || || || |||||||||||||||||||| |  ||||||||||| || ||||| ||||||||    
T  20510079 attgtccttagtaggtaatctatcccggaacaaacgccaagcaaacaagacaacctttaaaggaacatccttatgcca 20510002  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 261
Target Start/End: Complemental strand, 5760684 - 5760609
Alignment:
Q  186 tgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 261  Q
    ||||||| ||||||||||||||| | ||||| |||||| |||| ||||| |||||||  || ||||| ||||||||    
T  5760684 tgtccttcgtaggcaacctgtcttgaaacaaccgccaatcaaatagcaccacctttagaggaacatccttatgcca 5760609  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 22652973 - 22652917
Alignment:
Q  184 attgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctt 240  Q
    ||||||||||||||||||||| || | |||||| ||||||| ||| | |||||||||    
T  22652973 attgtcctttgtaggcaacctatcccagaacaaccgccaagtaaacaacacaacctt 22652917  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 264
Target Start/End: Original strand, 20017817 - 20017915
Alignment:
Q  166 aacaccatgccgatgcaaattgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgccacaa 264  Q
    ||||||| | ||||| | ||||||||| ||||||||||| || |||||||  |||||| |||| ||||||||||| || || |||||||||||||||||    
T  20017817 aacaccacgacgatgaagattgtccttagtaggcaacctatcacggaacagccgccaaccaaagagcacaaccttcaaaggaacatctttatgccacaa 20017915  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 4740813 - 4740761
Alignment:
Q  56 ctataaatgaaatgccaaacagccccaaaaatattacaatgtaaaaacaagtg 108  Q
    ||||||||||| ||||||||||  ||||||| ||||||||||||||| |||||    
T  4740813 ctataaatgaagtgccaaacagatccaaaaaaattacaatgtaaaaataagtg 4740761  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 261
Target Start/End: Complemental strand, 18690016 - 18689941
Alignment:
Q  186 tgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 261  Q
    ||||||| ||||||||||||||| | ||||| |||||| |||| ||||| |||||||  || ||||| ||||||||    
T  18690016 tgtccttcgtaggcaacctgtcttgaaacaaccgccaatcaaatagcaccacctttagaggaacatccttatgcca 18689941  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 264
Target Start/End: Complemental strand, 24739505 - 24739423
Alignment:
Q  182 aaattgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgccacaa 264  Q
    ||||||||||| || |||||||  || || || |||||||| ||||||||||| ||||| || |||||||| |||||||||||    
T  24739505 aaattgtccttcgttggcaaccgatcacgaaataaacgccacgcaaaaagcactaccttcaaggggacatccttatgccacaa 24739423  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 30505541 - 30505480
Alignment:
Q  44 atgccaagccatctataaatgaaatgccaaacagccccaaaaatattacaatgtaaaaacaa 105  Q
    ||||| ||| |||||||||| |||| ||| |||| ||||||||||||||||||||| |||||    
T  30505541 atgcccagctatctataaataaaataccagacagacccaaaaatattacaatgtaagaacaa 30505480  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 261
Target Start/End: Original strand, 129539 - 129615
Alignment:
Q  185 ttgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 261  Q
    |||||||| || ||||||||||| ||||||||||||||||| || || |||||||| |  || ||||| ||||||||    
T  129539 ttgtccttagttggcaacctgtcacggaacaaacgccaagctaagagaacaaccttaagaggaacatccttatgcca 129615  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 841966 - 842038
Alignment:
Q  189 cctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 261  Q
    |||||||||| | || ||| || |||| |||||| ||||||||||| ||||| || |||||||||||||||||    
T  841966 cctttgtaggaagccggtcacgaaacagacgccacgcaaaaagcaccaccttcaaagggacatctttatgcca 842038  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 30505401 - 30505327
Alignment:
Q  184 attgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatg 258  Q
    ||||||||||||||||||||| || |||||||| | |||| |||| | ||||||||| |  |||||||| |||||    
T  30505401 attgtcctttgtaggcaacctatcccggaacaaccaccaaacaaacaacacaaccttcagagggacatccttatg 30505327  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 27708467 - 27708523
Alignment:
Q  52 ccatctataaatgaaatgccaaacagccccaaaaatattacaatgtaaaaacaagtg 108  Q
    |||||||||||| ||||| || |||  |||||||| |||||||||||| ||||||||    
T  27708467 ccatctataaattaaatggcagacaaacccaaaaaaattacaatgtaataacaagtg 27708523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 23710755 - 23710811
Alignment:
Q  52 ccatctataaatgaaatgccaaacagccccaaaaatattacaatgtaaaaacaagtg 108  Q
    |||||||||||| ||||||||||||| ||| |||| |||||||||||| || |||||    
T  23710755 ccatctataaataaaatgccaaacagaccccaaaaaattacaatgtaacaataagtg 23710811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 47543236 - 47543184
Alignment:
Q  56 ctataaatgaaatgccaaacagccccaaaaatattacaatgtaaaaacaagtg 108  Q
    ||||||||||| ||||||||||  ||||||| ||||||||||||||| |||||    
T  47543236 ctataaatgaagtgccaaacagaaccaaaaaaattacaatgtaaaaataagtg 47543184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 26569390 - 26569317
Alignment:
Q  184 attgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatg 258  Q
    ||||||||| ||||||| ||| || || ||||||||||||| ||||||||||| ||| ||||| ||||| |||||    
T  26569390 attgtccttagtaggca-cctatcccgaaacaaacgccaagaaaaaagcacaatcttcaacggaacatccttatg 26569317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 30295554 - 30295508
Alignment:
Q  182 aaattgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaa 228  Q
    ||||||||||||||||||||||| || || |||| ||||||||||||    
T  30295554 aaattgtcctttgtaggcaacctatcccgaaacatacgccaagcaaa 30295508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 261
Target Start/End: Complemental strand, 10275161 - 10275088
Alignment:
Q  188 tcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 261  Q
    |||||||| ||| |||| |  |||||||  ||||||| ||||| ||||||||| || |||||||||||||||||    
T  10275161 tcctttgttggcgacctattacggaacagccgccaagaaaaaatcacaaccttcaaagggacatctttatgcca 10275088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 261
Target Start/End: Complemental strand, 41529072 - 41528995
Alignment:
Q  184 attgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 261  Q
    ||||||||| ||||| || || || |||||| || |||||||||| |  ||||||||||| || ||||||||||||||    
T  41529072 attgtccttagtaggtaatctatcccggaacgaatgccaagcaaacaagacaacctttaaaggaacatctttatgcca 41528995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 12092359 - 12092307
Alignment:
Q  188 tcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctt 240  Q
    ||||||||||||||||  ||| | ||||| ||||||||||||||||| |||||    
T  12092359 tcctttgtaggcaaccaatcttgaaacaagcgccaagcaaaaagcacgacctt 12092307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 259
Target Start/End: Original strand, 25335 - 25409
Alignment:
Q  185 ttgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgc 259  Q
    |||||||| || |||| |||||| || |||||||||||||| ||||| |||||||| |  |||||||| ||||||    
T  25335 ttgtccttagttggcagcctgtcacgaaacaaacgccaagcgaaaagaacaaccttcagagggacatccttatgc 25409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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