View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20573_high_48 (Length: 261)
Name: NF20573_high_48
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_high_48 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 9 - 261
Target Start/End: Complemental strand, 37345000 - 37344748
Alignment:
| Q |
9 |
gattattctatatcgagttctgtttttgattattatcaaaactactgagaagcttaaacctattgttatgtcacttatgtcggtgtctcctaggcaaaca |
108 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37345000 |
gattgttctatatcgagttgtgtttttgattattatcaaaactactgagaagcttaaacctattgttatgtcatttatgtcggtgtctcctaggcaaaca |
37344901 |
T |
|
| Q |
109 |
agacaaatcttggagaatcctactgccactcctttacatgtagaagttgtataattagtgcattcaattttgttttttggacatgtcttgtgtcttccaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37344900 |
agacaaatcttggagaatcctactgccactcctttacatgtagaagttgtataattagtgcattcaattttgttttttggacatgtcttgtgtcttccaa |
37344801 |
T |
|
| Q |
209 |
aacatgaatttttatatggtttcttatattttacatgccttccaaaacatagt |
261 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37344800 |
aacattaatttttatatggtttcttatattttacatgccttccaaaacatagt |
37344748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University