View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20573_high_49 (Length: 256)
Name: NF20573_high_49
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_high_49 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 7902850 - 7903056
Alignment:
| Q |
19 |
agctttatggaaagacattgcaaattgagcttgttggaacaactttggttacccctgctcccacagaaataccaaagttttctattatttgagtacagga |
118 |
Q |
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| T |
7902850 |
agctttatggaaagacattgcaaattgagcttgttggaacaactttggttacccctgctcccacagaaataccaaagttttctattatttgagtacagga |
7902949 |
T |
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| Q |
119 |
taatggtcatatgtcttgagttctgatttgcatgactttacttatgttgatactggtgtccactttgtacttatcatttcaaaaactttgatcagacttg |
218 |
Q |
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| T |
7902950 |
taatggtcatatgtc-tgagttctgatttgcatgactttacttatgttaatactggcgtgcactttgtacttgtcatttc-gaaactttgatcagacttg |
7903047 |
T |
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| Q |
219 |
gttaccaaa |
227 |
Q |
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||||||||| |
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| T |
7903048 |
gttaccaaa |
7903056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 107 - 223
Target Start/End: Original strand, 7913384 - 7913498
Alignment:
| Q |
107 |
ttgagtacaggataatggtcatatgtcttgagttctgatttgcatgactttacttatgttgatactggtgtccactttgtacttatcatttcaaaaactt |
206 |
Q |
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|||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||| |||||| |
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| T |
7913384 |
ttgaatacaggataatgatcatatgtcc-gagttctgatttgcatgactttacttatgttaatactggtgtgcactttgtacttgtcatttc-gaaactt |
7913481 |
T |
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| Q |
207 |
tgatcagacttggttac |
223 |
Q |
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| T |
7913482 |
tgatcagacttggttac |
7913498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 7913267 - 7913366
Alignment:
| Q |
19 |
agctttatggaaagacattgcaaattgagcttgttggaacaactttggttacccctgctc-----ccacagaaataccaaagttttctattatttgagta |
113 |
Q |
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| T |
7913267 |
agctttatggaaagacattgcaaattgagcttgttggaacaactttggttacccctgctctgctcctacaaaaatacccaagttttctattatttgagta |
7913366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 7896377 - 7896435
Alignment:
| Q |
19 |
agctttatggaaagacattgcaaattgagcttgttggaacaactttggttacccctgct |
77 |
Q |
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| T |
7896377 |
agcttgatggaaagacattgcaaattgagcttgttggaacaagtttggttactcctgct |
7896435 |
T |
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