View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20573_high_54 (Length: 248)
Name: NF20573_high_54
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_high_54 |
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Alignment Details
Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 118 - 230
Target Start/End: Complemental strand, 3870767 - 3870655
Alignment:
| Q |
118 |
agtgcaaattagcctacatcttatcaactaaggaaaccataaatcaaccaagttgtcatgaactcggctgatcacacatcacctcagttgaacttcaaat |
217 |
Q |
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| T |
3870767 |
agtgcaaattagcctacatcttctcaactaaggaaaccataaatcaaccaagttgtcatgaactcggctgatcacacatcacctcagttgaacttcaaat |
3870668 |
T |
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| Q |
218 |
tttgcacgacaac |
230 |
Q |
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| T |
3870667 |
tttgcacaacaac |
3870655 |
T |
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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 3870837 - 3870768
Alignment:
| Q |
4 |
ttttaacacccttatacactagacactatttgaagtagtctaggaacccatatttgagaaatatagtccc |
73 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
3870837 |
ttttatcacccttatacactagacactatttgaagtagtctaggaacccacaattgagaaatatagtccc |
3870768 |
T |
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