View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20573_high_59 (Length: 238)
Name: NF20573_high_59
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_high_59 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 52269005 - 52269223
Alignment:
| Q |
4 |
cagcttcacctggacgcttcattactgattccatatctttgagaaattgatccgcatcaaagttcacttccttattccttcacaagtcccaatataaata |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52269005 |
cagcttcacctggacgcttcattactgattccatatctttgagaaattgatccgcatcaaagttcacttccttattccttcacaagtcccaatataaata |
52269104 |
T |
|
| Q |
104 |
gatatcatcgtaatgaagtaatatagcaaaaccacaaaggcaacgttagaaaactggtaatttggtttggatagaaaatgaagatttgattgaattttca |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
52269105 |
gatatcatcgtaatgaagtaatatagcaaaaccacaaaggcaacgttagaaaactggtaatttggtttggatagaaaattaagatttgattgaatcttca |
52269204 |
T |
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| Q |
204 |
atatgaaaatgaaataaat |
222 |
Q |
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|||| ||| |||||||||| |
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| T |
52269205 |
atataaaattgaaataaat |
52269223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 4 - 174
Target Start/End: Complemental strand, 13744238 - 13744069
Alignment:
| Q |
4 |
cagcttcacctggacgcttcattactgattccatatctttgagaaattgatccgcatcaaagttcacttccttattccttcacaagtcccaatataaata |
103 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13744238 |
cagcttcacctggacgcttcattactgattccatctctttgaaaaattgatccacatcaaagttcacttccttattccttcacaagtcccaatataaata |
13744139 |
T |
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| Q |
104 |
gatatcatcgtaatgaagtaatatagcaaaaccacaaaggcaacgttagaaaactggtaatttggtttgga |
174 |
Q |
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|||||||| |||||||||| |||||||||||||| ||| ||||||||||||| |||||||||||||||| |
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| T |
13744138 |
catatcatcacaatgaagtaa-atagcaaaaccacagaggtaacgttagaaaaccggtaatttggtttgga |
13744069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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