View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20573_high_60 (Length: 237)
Name: NF20573_high_60
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_high_60 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 29941680 - 29941478
Alignment:
| Q |
15 |
gagatgaaggagtttgttgtaaattccaaattccaaataatgatcttgagaatctgtcacaggtgggnnnnnnnggaccataattccatgaacatgacaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29941680 |
gagatgaaggagtttgttgtaaattccaaattccaaataatgatcttgagaatctgtcacaggtgggaaaaaaaggaccataattccatgaacatgacaa |
29941581 |
T |
|
| Q |
115 |
gggaaacttgcctggtaaatctttcctgtagttatgttattatcacgggtcaacttgacatccataaagcgctcatagtttccaagatccaggtccacct |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29941580 |
gggaaacttgcctggtaaatctttcctgtagttatgttattatcacgggtcaacttgacatccataaagcgctcatagtttccaagatccaggtccacct |
29941481 |
T |
|
| Q |
215 |
ttc |
217 |
Q |
| |
|
||| |
|
|
| T |
29941480 |
ttc |
29941478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 26519359 - 26519269
Alignment:
| Q |
125 |
cctggtaaatctttcctgtagttatgttattatcacgggtcaacttgacatccataaagcgctcatagtttccaagatccaggtccacctt |
215 |
Q |
| |
|
|||| ||||| ||||| ||||| |||||||| || |||||||| |||| |||| || || ||||||||||||||||| ||||| ||||| |
|
|
| T |
26519359 |
cctgataaatttttccagtagtgatgttattgtcgcgggtcaatttgatgtccaagaaacgttcatagtttccaagatcaaggtcaacctt |
26519269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University