View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20573_high_61 (Length: 237)
Name: NF20573_high_61
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_high_61 |
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| [»] scaffold0337 (2 HSPs) |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: scaffold0337 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: scaffold0337
Description:
Target: scaffold0337; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 18905 - 18715
Alignment:
| Q |
21 |
tctcaatgaaataaaacttggtgaaggaaaaaagagtgcagcttatacacataaaattaaatttaacagctagataaacataatttatatttttaaataa |
120 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
18905 |
tctcaatggaataaaacttgatgaaggaaaaaagagtgcagcttatacacataaaattaaatttgacagctagataaacataatttatatttttaaatac |
18806 |
T |
|
| Q |
121 |
agaataaaagttgaaatattgtgatgtcccctagtttcaattgtgcaattaatgcagactacgcataagtgcccaacaaatacctataacacact |
215 |
Q |
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| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||| ||||||||| |
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| T |
18805 |
aaaataaaagttgaaatattgtgatgtcccctagtttca----tgcaattaatgcagattacgcataagtgcccaacaaaaacctgtaacacact |
18715 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0337; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 6199 - 5996
Alignment:
| Q |
20 |
ttctcaatgaaataaaacttggtgaaggaaaaaagagtgcagcttatacacataaaattaaatttaacagctagataaacataatttatatttttaaata |
119 |
Q |
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||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||| |
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| T |
6199 |
ttctcaatggaataaaacttgatgaaggaaaaaagagtgcagcttatacacataaaataaaatttgacagctagataaacattatttatatttttaaata |
6100 |
T |
|
| Q |
120 |
aagaataaaagttgaaatattgtgatgtcccctagtttcaattgtgcaattaatgcagactacgcataagtgcccaacaaatacctataacacacttcat |
219 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| || ||||||| ||||| || |||| |||| |
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| T |
6099 |
aacaataaaagttgaaatattgtgatgtcccctagtttcaattgtgcaattaatacagactacgaatacatggccaacaagcacctacaagacacgtcat |
6000 |
T |
|
| Q |
220 |
atga |
223 |
Q |
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|||| |
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|
| T |
5999 |
atga |
5996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 136; Significance: 4e-71; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 31 - 215
Target Start/End: Original strand, 22183309 - 22183489
Alignment:
| Q |
31 |
ataaaacttggtgaaggaaaaaagagtgcagcttatacacataaaattaaatttaacagctagataaacataatttatatttttaaataaagaataaaag |
130 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
22183309 |
ataaaatttggtgaagtaaaaaagagtgcagcgtatacacataaaattaaatttaacagctagataaacataatttatatttttaaataaaaattaaaag |
22183408 |
T |
|
| Q |
131 |
ttgaaatattgtgatgtcccctagtttcaattgtgcaattaatgcagactacgcataagtgcccaacaaatacctataacacact |
215 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||| ||||||||| |
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|
| T |
22183409 |
ttgaaatattgtgatgtcccctagtttca----tgcaattaatgcagattacgcataagtgcccaacaaaaacctgtaacacact |
22183489 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 31 - 204
Target Start/End: Original strand, 21691868 - 21692042
Alignment:
| Q |
31 |
ataaaacttggtgaaggaaa-aaagagtgcagcttatacacataaaattaaatttaacagctagataaacataatttatatttttaaataaagaataaaa |
129 |
Q |
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|||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21691868 |
ataaaacttggtgagggaaagaaagagtgcagcatatacacataaaattaaatttaacagctagataaacataatttatatttttaaataaagaataaaa |
21691967 |
T |
|
| Q |
130 |
gttgaaatattgtgatgtcccctagtttcaattgtgcaattaatgcagactacgcataagtgcccaacaaatacc |
204 |
Q |
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||||||||||| |||||||||||| |||||||||||||||||||||||| |||| ||| | |||||||||||| |
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| T |
21691968 |
gttgaaatattatgatgtcccctaatttcaattgtgcaattaatgcagattacgaatatataaccaacaaatacc |
21692042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 31 - 171
Target Start/End: Complemental strand, 20149523 - 20149383
Alignment:
| Q |
31 |
ataaaacttggtgaaggaaaaaagagtgcagcttatacacataaaattaaatttaacagctagataaacataatttatatttttaaataaagaataaaag |
130 |
Q |
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|||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
20149523 |
ataaaatttggtgaagtaaaaaagagtgcagcgtatacacataaaattaaatttaacagctagataaacataatttatatttttaaataaaaattaaaag |
20149424 |
T |
|
| Q |
131 |
ttgaaatattgtgatgtcccctagtttcaattgtgcaatta |
171 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
20149423 |
ttgaaatattgtgatgtcccctagtttcaatcgtgcaatta |
20149383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 31 - 171
Target Start/End: Original strand, 21728688 - 21728828
Alignment:
| Q |
31 |
ataaaacttggtgaaggaaaaaagagtgcagcttatacacataaaattaaatttaacagctagataaacataatttatatttttaaataaagaataaaag |
130 |
Q |
| |
|
|||||||||| |||||||||||||||||||| | ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
21728688 |
ataaaacttgatgaaggaaaaaagagtgcagtgtgtacacattcaattaaatttactagctagataaacataatttatatttttaaataaagaataaaac |
21728787 |
T |
|
| Q |
131 |
ttgaaatattgtgatgtcccctagtttcaattgtgcaatta |
171 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
21728788 |
ttgaaatattgtgatgtcccctagtttcaattgtgcaatta |
21728828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 31 - 171
Target Start/End: Original strand, 21847794 - 21847932
Alignment:
| Q |
31 |
ataaaacttggtgaaggaaaaaagagtgcagcttatacacataaaattaaatttaacagctagataaacataatttatatttttaaataaagaataaaag |
130 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
21847794 |
ataaaacttgatgaaggaaaaaagagtgcagc--atacacataaaattaaatttaaaagctagataaacataatttatatttttaagtaaagaaaaaaag |
21847891 |
T |
|
| Q |
131 |
ttgaaatattgtgatgtcccctagtttcaattgtgcaatta |
171 |
Q |
| |
|
| |||||| |||||| |||||| ||||| |||||||||||| |
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| T |
21847892 |
tagaaataatgtgatatcccctggtttcgattgtgcaatta |
21847932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 31 - 170
Target Start/End: Original strand, 67711 - 67850
Alignment:
| Q |
31 |
ataaaacttggtgaaggaaaaaagagtgcagcttatacacataaaattaaatttaacagctagataaacataatttatatttttaaataaagaataaaag |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
67711 |
ataaaacttggtgaaggaaaaaagagtgcagcatatacacataaaattaaatttaacagctagataaacataatttatatttttaaataaaagttaaaag |
67810 |
T |
|
| Q |
131 |
ttgaaatattgtgatgtcccctagtttcaattgtgcaatt |
170 |
Q |
| |
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||||||||||||||||| ||||||||||||| |||||||| |
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|
| T |
67811 |
ttgaaatattgtgatgttccctagtttcaatcgtgcaatt |
67850 |
T |
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