View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20573_high_63 (Length: 234)
Name: NF20573_high_63
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_high_63 |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 14561957 - 14562167
Alignment:
| Q |
1 |
taagtgaaagcataatgcataatataagtctattggtgtaatgacaaaaggttacaataaatacaatatttgttgaaatcttctatattctcattttgta |
100 |
Q |
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| T |
14561957 |
taagtgaaagcataatgcataatataagtctattggtgtaatgacaaaaggttacaata----caatatttgttgaaatcttctatattctcattttgta |
14562052 |
T |
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| Q |
101 |
taagctaatcttacgtagaatctgattggttnnnnnnntgtctgttaaaattgttaagtgtgacttaaaatctcataatacataaaatgaaaggttttag |
200 |
Q |
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| T |
14562053 |
taagctaatcttacgtagaatctgactggttaaaaaaatgtctgttaaaattgttaagtgtgacttaaaatctcataatacgtaaaatgaaaggttttag |
14562152 |
T |
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| Q |
201 |
aaaagccaggcacac |
215 |
Q |
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| T |
14562153 |
aaaagccaggcacac |
14562167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 14563355 - 14563412
Alignment:
| Q |
71 |
tgttgaaatcttctatattctcattttgtataagctaatcttacgtagaatctgattg |
128 |
Q |
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| T |
14563355 |
tgttgaaatctcctagaatctcattttgtataagcaaatctttagtagaatctgattg |
14563412 |
T |
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