View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20573_high_73 (Length: 204)
Name: NF20573_high_73
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_high_73 |
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Alignment Details
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 15 - 187
Target Start/End: Original strand, 54671964 - 54672129
Alignment:
| Q |
15 |
aatatacaattgggagaaaaaatttaaccaaagatagtcttca---ggttccacaataaaaattagttattagaaagacgatgaatatttcgcaccaata |
111 |
Q |
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| T |
54671964 |
aatatacaattgggagaaaaaatttaaccaaagatagtcttcatcaggttccacaataaaaattagttattacaaagacgatgaatatttcgc------- |
54672056 |
T |
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| Q |
112 |
atgcttnnnnnnnnttaagtaaaaaatatgcacccaaaagaatagggtcagaatgaaatagataaggggttcaatt |
187 |
Q |
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||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
54672057 |
-tgctt-aaaaaaattaa-taaaaaatatgcacccaaaagaatagggtcagaatgaaatagataagggcttcaatt |
54672129 |
T |
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