View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20573_low_10 (Length: 454)
Name: NF20573_low_10
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 60 - 434
Target Start/End: Original strand, 24079131 - 24079502
Alignment:
| Q |
60 |
acaaaacaatgtaatacatggaagtggtagaatcaatgcaggtttaagttctaacaagatgcttagtttcaacactttttccgtattattattgcatcat |
159 |
Q |
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| T |
24079131 |
acaaaacaatgtaatacatggaagtggtagaatcaatgcaggtttaagttctaacaagatgcttagtttcaacactttttccgtatt---attgcatcat |
24079227 |
T |
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| Q |
160 |
acagttgattcagatgaataagtgtcatttgacatgaaatacttacataggttggctcgtacttgataaaatttctctttggactcgagatccttctctt |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24079228 |
acagttgattcagatgaataagtgtcatttgacatgaaatacttacataggttggctcgtacttgataaaatttctctttggactcgagatccttctctt |
24079327 |
T |
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| Q |
260 |
gattttcaatatcgctggccttttctcgaagccttttctctttttcatcaacctcatagtttctttctttgatcgaccctgttcgactttgacaatcaaa |
359 |
Q |
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| T |
24079328 |
gattttcaatatcactggccttttctcgaagccttttctctttttcatcaacctcatagtttctctctttgatcaaccccatttgacttagacaatcaaa |
24079427 |
T |
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| Q |
360 |
ctctctcggcttagcattcaactcttgttgaataggttgcaagcgttgttcgttttcatcaacaaaccttgttag |
434 |
Q |
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| T |
24079428 |
ctctctgtgcttagcattcaactcttgttgaatagattgcaagagtttttcgttttcatcaaccaaccttgttag |
24079502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 350 - 434
Target Start/End: Original strand, 24079502 - 24079586
Alignment:
| Q |
350 |
gacaatcaaactctctcggcttagcattcaactcttgttgaataggttgcaagcgttgttcgttttcatcaacaaaccttgttag |
434 |
Q |
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| T |
24079502 |
gacaatcaaactctctcggcttagcattcaactcttgttgaatagattgcaagcgttgttcgttttcatcaaccaaccttgttag |
24079586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 24079048 - 24079116
Alignment:
| Q |
1 |
tgcaatagctgaatcagatatcatataatataaaga-taatgagagaataaggtatgaatacaaaacaa |
68 |
Q |
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| T |
24079048 |
tgcaatagctgaatcagatatcatataatataaagattaatgagagaataaagtatgaatacaaaacaa |
24079116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 259 - 434
Target Start/End: Complemental strand, 16437481 - 16437312
Alignment:
| Q |
259 |
tgattttcaatatcgctggccttttctcgaagccttttctctttttcatcaacctcatagtttctttctttgatcgaccctgttcgactttgacaatcaa |
358 |
Q |
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|||||||| ||||| ||||||||||||||||||||||| || ||||||||| | ||||||||||||||||||||| |||||| || | ||||| |
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| T |
16437481 |
tgattttcgatatccctggccttttctcgaagccttttttccttttcatcagcgtcatagtttctttctttgatcaaccctgcaagaat------atcaa |
16437388 |
T |
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| Q |
359 |
actctctcggcttagcattcaactcttgttgaataggttgcaagcgttgttcgttttcatcaacaaaccttgttag |
434 |
Q |
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| T |
16437387 |
actctctcctcttagcattcaactcatgttcaacagtttgcaagagttgttctttttcatcaaccgaccttgttag |
16437312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 51518977 - 51518910
Alignment:
| Q |
239 |
tggactcgagatccttctcttgattttcaatatcgctggccttttctcgaagccttttctctttttcat |
307 |
Q |
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| T |
51518977 |
tggactcgagatccttcacttgatcttcaatatccttggccttttctccgagcc-tttctctttttcat |
51518910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 7893714 - 7893672
Alignment:
| Q |
148 |
ttattgcatcatacagttgattcagatgaataagtgtcatttg |
190 |
Q |
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| T |
7893714 |
ttattgcatcatacagttgattgacatgaataagtggcatttg |
7893672 |
T |
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