View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20573_low_11 (Length: 454)
Name: NF20573_low_11
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 16 - 451
Target Start/End: Complemental strand, 51279001 - 51278566
Alignment:
| Q |
16 |
atctttgcattttcattttcgcagttatctatctataattacacgattatgattttccagaatgaatgaatgaatcagattcagattgattctatctctt |
115 |
Q |
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| T |
51279001 |
atctttgcattttcattttcgcagttatctatctataattacacgattatgattttccagaatgaaagaatgaatcagattcagattgattctatctctt |
51278902 |
T |
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| Q |
116 |
ctcagggaatatacatattatttcaccgtcgctgctggatgcaaatgtaataaactttactaattaccataacgacaacaaccgtcgagttcgagttaga |
215 |
Q |
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| T |
51278901 |
ctcagggaatatacatattatttcaccgtcgctgctggatgcaaatgtaataaactttactaattaccataacgacaacaaccgtcgagttcgagttaga |
51278802 |
T |
|
| Q |
216 |
agaagaaccatatggacttccactcctctttgtatgggcagacgttcctgcaaaatcgccggtcgaaaggtaccgtacctccctcactatcttccttttc |
315 |
Q |
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| T |
51278801 |
agaagaaccatatggacttccactcctctttgtatgggcagacgttcctgcaaaatcgccggtcgaaaggtaccgtacctcccttactatcttccttttc |
51278702 |
T |
|
| Q |
316 |
ctgttttttctataatgcatatcacctgtttgatcaaaatcccgtgctgtaacatcacacactccaccaccacgtatatatagatatatttgaacggtag |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51278701 |
ctgttttttctataatgcatatcacctgtttgatcaaaatcctgtgttgtaacatcacacactccaccaccacgtatatatagatatatttgaacggtag |
51278602 |
T |
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| Q |
416 |
agttcaacaattcggtgcacctggcaatatgttcat |
451 |
Q |
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| T |
51278601 |
agttcaacaattcggtgcacctgacaatatgttcat |
51278566 |
T |
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