View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20573_low_12 (Length: 453)
Name: NF20573_low_12
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 225 - 447
Target Start/End: Original strand, 5304385 - 5304607
Alignment:
| Q |
225 |
ctctcattctctccttgtctgattgatcattgttattcaatcctccctctctttgaaggtgagtatgacatctatccccaagttatagagagctcaatct |
324 |
Q |
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| T |
5304385 |
ctctcattctctccttgtctgattgatcattgttattcaatcctccctctctttgaaggtgagtatgacatctatccccaagttatagagagctcaatct |
5304484 |
T |
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| Q |
325 |
aacatatcttcgatttggagtttcagatttggaatctgcatggacattgggagctcagttcagttctggatctcaaagtgtataggcattgttacgcaag |
424 |
Q |
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| T |
5304485 |
aacatatcttcgatttggagtttcagatttggaatctgcatggacattgggagctcagttcagttctagatctcaaagtgtataggcattgttacgcaag |
5304584 |
T |
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| Q |
425 |
ctttgctcttctccttcatatca |
447 |
Q |
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| T |
5304585 |
ctttgcttttctccttcttatca |
5304607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 304 - 369
Target Start/End: Original strand, 6454138 - 6454204
Alignment:
| Q |
304 |
aagttatagagagct-caatctaacatatcttcgatttggagtttcagatttggaatctgcatggac |
369 |
Q |
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| T |
6454138 |
aagttatagcgagcttcaataaaacatttcttcgatttggagtttcagatttagaatctgcatggac |
6454204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 304 - 369
Target Start/End: Complemental strand, 6762203 - 6762137
Alignment:
| Q |
304 |
aagttatagagagct-caatctaacatatcttcgatttggagtttcagatttggaatctgcatggac |
369 |
Q |
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||||||||| ||||| |||| ||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
6762203 |
aagttatagcgagcttcaataaaacatttcttcgatttggagtttcagatttagaatctgcatggac |
6762137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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