View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20573_low_13 (Length: 452)
Name: NF20573_low_13
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 34 - 173
Target Start/End: Complemental strand, 49216957 - 49216822
Alignment:
| Q |
34 |
catcatcaatttcaacagtaacaatttcttcctctattgcttccattccaactttgcttcttctannnnnnnncttcttttgttgtgtgcttcatcatga |
133 |
Q |
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| T |
49216957 |
catcatcaatttcaacggtaacaatttcttcctctcttcctgccatttcaactttgcttcttctattttt----ttcttttgttgtgtacttcatcatca |
49216862 |
T |
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| Q |
134 |
atttcaagagtggtaacaattcatccaaaactcaacaatt |
173 |
Q |
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|||| | |||||||||||||||||||||||||||||||| |
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| T |
49216861 |
attttatcagtggtaacaattcatccaaaactcaacaatt |
49216822 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 32369136 - 32369187
Alignment:
| Q |
16 |
caatttcttcataagtctcatcatcaatttcaaca---gtaacaatttcttc |
64 |
Q |
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| T |
32369136 |
caatttcttcatatgtctcatcatcaatttcaacagttgtaacaatttcttc |
32369187 |
T |
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