View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20573_low_14 (Length: 452)
Name: NF20573_low_14
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 35374416 - 35373984
Alignment:
| Q |
1 |
tcgcattatgtgtgcaacgtagtttgtgttactgagtgagagagaaaggagactataatttgtgtcaaaaaagaaaagaaccaacccnnnnnnn---ata |
97 |
Q |
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| T |
35374416 |
tcgcattatgtgtgcaacgtagtttgtgttactgag----agagaaaggagactataatttgtgtcaaaaaagaaaagaaccaacccttttttttttata |
35374321 |
T |
|
| Q |
98 |
ggaacggggactgtaagatttttggattcaatcttataaaagatttgagctgttaataaatactcaacgagatccgatcaaatacaaaatttgatttgat |
197 |
Q |
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| T |
35374320 |
ggaacggggactgtaagatttttggattcaatcttataaaagatttgagctgttaataaatactcaacgagatccgatcaaatacaaaatttgatttgat |
35374221 |
T |
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| Q |
198 |
caattatatatgtcacactttctttagaaattctgtgaagaacaannnnnnnnnnnnnnnnnacacaaacaatttgattctggtagacttatcaaaaata |
297 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||| |||||||| ||||||| |
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| T |
35374220 |
caattatatatgtcacactttctttagatattctgtgaagaacaa-ttttttattttattttatacaaacaatttgattctggcagacttataaaaaata |
35374122 |
T |
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| Q |
298 |
aatatgaatataaatttattactacatttaatatagaaaatttgattttgttagatttggtgttctatannnnnnncaaataaataattatatttaaaat |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35374121 |
aatatgaatataaatttattactacatttaatatagaaaatttgattttgttagatttggtgttctatatttttttcaaataaataattatatttaaaat |
35374022 |
T |
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| Q |
398 |
atccaaaactaataatcagcaagtttttgtatagaaat |
435 |
Q |
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| T |
35374021 |
atacaaaactaataatcagcaagtttttgtatagaaat |
35373984 |
T |
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