View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20573_low_15 (Length: 446)
Name: NF20573_low_15
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Complemental strand, 50095629 - 50095201
Alignment:
| Q |
1 |
aaaccagaatgtagcttgagtaaatatttaattggtgcaaaattgtgggtggcctatttcaacaattcacaaactcaaaagacgttgttatgtaaccagt |
100 |
Q |
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| T |
50095629 |
aaaccagaatgtagcttgagtaaatatttaattggtgcaaaattgtgggtggcctatttcaacaattcacaaactcaaaagacgttgttatgtaaccagt |
50095530 |
T |
|
| Q |
101 |
atgttagcaggtcgggttacagatacaggtctaagtaatgttaagaacataaacctcatccttctatcacattccacagaccacagttactctgaacaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
50095529 |
atgttagcaggtcgggttacagatacaggtctaagtaatgttaagaacataaacctcatccttctatcacattccacagatcacagttactctgaacaaa |
50095430 |
T |
|
| Q |
201 |
ttccagtgaatttcacaagtcattaggtcatcccaaagagcataaatatgcatcaatttaccgtagaagatgccacaatcatttagatatatcaaagaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50095429 |
ttccagtgaatttcacaagtcattaggtcatcccaaagagcataaatatgcatcaatttaccgtagaagatgccacaatcatttagatatatcaaagaat |
50095330 |
T |
|
| Q |
301 |
gacttataagttataagcaaacataaaacaatatacgaacataagctaactggattaatctcaatgttaaaggcagccttaggcactgccatattcattt |
400 |
Q |
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| T |
50095329 |
gacttataagttataagcaaacataaaacaatatacgaacataagctaactggattaatctcaatgttaaaggcagccttaggcactgccatattcattt |
50095230 |
T |
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| Q |
401 |
cctggattaatattcattggttgtgcttg |
429 |
Q |
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| T |
50095229 |
cctggatcaatattcattggttgtgcttg |
50095201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 335 - 430
Target Start/End: Original strand, 35497317 - 35497411
Alignment:
| Q |
335 |
acgaacataagctaactggattaatctcaatgttaaaggcagccttaggcactgccatattcatttcctggattaatattcattggttgtgcttga |
430 |
Q |
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||||||| ||||||||||||||||| ||||||| |||| ||||||||||||||| || |||||||||||| || ||||||||| ||||||| |||| |
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| T |
35497317 |
acgaacagaagctaactggattaatttcaatgtcaaag-cagccttaggcactgtcagattcatttcctgaatcaatattcatcggttgtggttga |
35497411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 423
Target Start/End: Complemental strand, 7074197 - 7074127
Alignment:
| Q |
352 |
ggattaatctcaatgttaaaggcagccttaggcactgccatattcatttcctggattaatattcattggttg |
423 |
Q |
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|||||||| ||||| |||| |||| |||||||||||| || |||||||||||| || ||||||||| ||||| |
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| T |
7074197 |
ggattaatatcaatattaa-ggcaaccttaggcactgtcagattcatttcctgaatcaatattcataggttg |
7074127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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