View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20573_low_20 (Length: 422)
Name: NF20573_low_20
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 182 - 406
Target Start/End: Complemental strand, 30402284 - 30402061
Alignment:
| Q |
182 |
gaaatctattgggccatagtgaaagtaacaccaaaataatagttagggaggaaaaatgtagctaatgtagatatagtaaagaaaactgcagctgcaaaga |
281 |
Q |
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| T |
30402284 |
gaaatctattgggccatagtgaaagtaacaccaaaataatagttagggaggaaaaatgtagctaatgtagatatagtaaagaaaactgcagctgcaaaga |
30402185 |
T |
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| Q |
282 |
gaggtagcttgaagtatcttggaaaaatttaaatgaaagtctacaaattattctcaattctacatatatatataattaacttctatatccaaatactcat |
381 |
Q |
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| T |
30402184 |
gaggtagcttgaagtatcttggaaaaatttaaatgaaagtctacaaattattctcaattctacatatatatataattaacttctatatccaaatactcat |
30402085 |
T |
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| Q |
382 |
tcacctatgtgaaaaccattataat |
406 |
Q |
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| T |
30402084 |
tca-ctatgtgaaaaccattataat |
30402061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 30402423 - 30402330
Alignment:
| Q |
4 |
aagaaccccaaaaccgtatatatcactctttttggtcaagtggccttcacaaaaaagagaaatagaaaatatgttatgaatacaattgtagttt |
97 |
Q |
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| T |
30402423 |
aagaaccccaaaaccgtatatatcactctttttggtcaagtggccttcacaaaaaagagaaatagaaaatatgttatgaatacaattgtagttt |
30402330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 30405506 - 30405374
Alignment:
| Q |
7 |
aaccccaaaaccgtatatatcactctttttggtcaagtggccttcacaaaaaagagaaatagaaaatatgttatgaatacaattgtagtttgnnnnnnnn |
106 |
Q |
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| T |
30405506 |
aaccccaaaaccgtatacatcactctttttggtcaagtgaccttcacaaaaaagacaattcgaaaagatgttaggaataaaattgtaggtt-----tttt |
30405412 |
T |
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| Q |
107 |
nnnggcaagttgtaataatcatgatattggcttgaaaa |
144 |
Q |
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| T |
30405411 |
tttggtaagttgtaataatcatgatattggcttgaaaa |
30405374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 143
Target Start/End: Complemental strand, 30402314 - 30402281
Alignment:
| Q |
110 |
ggcaagttgtaataatcatgatattggcttgaaa |
143 |
Q |
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| T |
30402314 |
ggcaagttgtaataatcatgatattggcttgaaa |
30402281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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