View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20573_low_23 (Length: 410)
Name: NF20573_low_23
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_low_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 22727994 - 22727603
Alignment:
| Q |
1 |
atacttcatataagtgtaggggcttcttcggtagctgcttttgccgccaccgtagttgtgatgttgctaaaccatcccatggcatcactgcaagagaagt |
100 |
Q |
| |
|
|||||||||| ||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22727994 |
atacttcatagaagtgtaggggttgcttcagtagctgcttttgccgccaccgtagttgtgatgttgctaaaccatcctttggcatcactgcaagagaagt |
22727895 |
T |
|
| Q |
101 |
ttcaaggtaagttaatggaatttaaagataaaagaatgaaggcgacgtctgagattctaatgaacatgaggattcttaaacttcatgcatgggagttgaa |
200 |
Q |
| |
|
|||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
22727894 |
ttcaagttaagttaatggagttcaaagataaaagaatgaaggcgacgtctgagattctaatgaacatgaggattcttaaacttcaagcatgggagatgaa |
22727795 |
T |
|
| Q |
201 |
tttcttatcaaagatcattcatcttaggaagttagaggagatatggctaaagaaatttcttggttgtacagcaattgttagatttctcttcttcaatgct |
300 |
Q |
| |
|
|||||||| || || |||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||| ||||| ||||| |
|
|
| T |
22727794 |
attcttatcgaaaattattcatattaggaagttagaggagacatggctaaagaaatttcttggtagtacagcaattattagatttctgttctttaatgcc |
22727695 |
T |
|
| Q |
301 |
ccgacgtttcttgctgtggtaactttcggttcttgtgttcttctaagcatcccacttgaatcaggaaagatcttatctgctcttgcaacatt |
392 |
Q |
| |
|
|| | |||| |||||||||| ||||| ||| ||||||||||| || |||| || ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22727694 |
ccaatgtttgttgctgtggttacttttggtgcttgtgttcttataggcattccgcttgaatcaggaaagattttatctgctcttgcaacatt |
22727603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 22738989 - 22739377
Alignment:
| Q |
1 |
atacttcatataagtgtaggggcttcttcggtagctgcttttgccgccaccgtagttgtgatgttgctaaaccatcccatggcatcactgcaagagaagt |
100 |
Q |
| |
|
|||||||||| |||||||||| | ||||| |||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
22738989 |
atacttcatagaagtgtagggaatgcttcgctagcagcttttgccgccactgtagttgtgatgttgctaaaccatcctatggcatcactgcaagagaagt |
22739088 |
T |
|
| Q |
101 |
ttcaaggtaagttaatggaatttaaagataaaagaatgaaggcgacgtctgagattctaatgaacatgaggattcttaaacttcatgcatgggagttgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
22739089 |
ttcaaggtaagttaatggaatttaaagataaaagaatgaaggcgacgtctgagattctaatgaacatgaggattcttaaacttcaagcatgggagatgaa |
22739188 |
T |
|
| Q |
201 |
tttcttatcaaagatcattcatcttaggaagttagaggagatatggctaaagaaatttcttggttgtacagcaattgttagatttctcttcttcaatgct |
300 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||| || |||||||| |||||||||||||||| ||||| |
|
|
| T |
22739189 |
attcttatcgaagattattcagactaggaagttagaggagacatggctaaagaaatttcttggtggtgcagcaattattagatttctcttctttaatgcc |
22739288 |
T |
|
| Q |
301 |
ccgacgtttcttgctgtggtaactttcggttcttgtgttcttctaagcatcccacttgaatcaggaaagatcttatctgctcttgcaac |
389 |
Q |
| |
|
|| |||||| |||||||||| ||||| ||| |||| ||| || || |||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
22739289 |
ccaacgtttgttgctgtggttacttttggtgcttgcgttgttataggcattccgcttgaatcaggaaagatcttatctgctcttgcaac |
22739377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 22751221 - 22751120
Alignment:
| Q |
93 |
agagaagtttcaaggtaagttaatggaatttaaagataaaagaatgaaggcgacgtctgagattctaatgaacatgaggattcttaaacttcatgcatgg |
192 |
Q |
| |
|
||||||||||||| ||||| |||| || | |||||||||||||||||| || ||||||||| ||| ||||||||||||||| |||||||| | |||| |
|
|
| T |
22751221 |
agagaagtttcaaaacaagttgatggcatcaagagataaaagaatgaaggccacatctgagattttaaggaacatgaggattctcaaacttcaaggatgg |
22751122 |
T |
|
| Q |
193 |
ga |
194 |
Q |
| |
|
|| |
|
|
| T |
22751121 |
ga |
22751120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 393
Target Start/End: Complemental strand, 22751000 - 22750921
Alignment:
| Q |
314 |
ctgtggtaactttcggttcttgtgttcttctaagcatcccacttgaatcaggaaagatcttatctgctcttgcaacattt |
393 |
Q |
| |
|
||||||| ||||| ||||||||| || || || | |||||||||||||||| |||||||||||| | |||||||||||| |
|
|
| T |
22751000 |
ctgtggttacttttggttcttgtattgttataggggtcccacttgaatcagggaagatcttatcttcacttgcaacattt |
22750921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 182
Target Start/End: Complemental strand, 41452522 - 41452424
Alignment:
| Q |
84 |
atcactgcaagagaagtttcaaggtaagttaatggaatttaaagataaaagaatgaaggcgacgtctgagattctaatgaacatgaggattcttaaact |
182 |
Q |
| |
|
|||| ||||||||||||||||| |||||| ||||| | || |||| |||||||||| | || ||||| ||| ||| |||||||||||| |||||||| |
|
|
| T |
41452522 |
atcattgcaagagaagtttcaaaataagttgatggagtcaaaggatacaagaatgaagaccacatctgaaattttaaggaacatgaggatccttaaact |
41452424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 182
Target Start/End: Complemental strand, 14241507 - 14241409
Alignment:
| Q |
84 |
atcactgcaagagaagtttcaaggtaagttaatggaatttaaagataaaagaatgaaggcgacgtctgagattctaatgaacatgaggattcttaaact |
182 |
Q |
| |
|
|||| |||||||||||||||||| |||||| ||||| | || ||| |||||||| | |||||||| ||| ||| |||||||||||| |||||||| |
|
|
| T |
14241507 |
atcattgcaagagaagtttcaagataagttgatggagtcaaaggatgctagaatgaaaaccacgtctgaaattttaaggaacatgaggatccttaaact |
14241409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University