View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20573_low_26 (Length: 366)

Name: NF20573_low_26
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20573_low_26
NF20573_low_26
[»] chr4 (3 HSPs)
chr4 (17-348)||(2897133-2897464)
chr4 (45-348)||(2886912-2887211)
chr4 (52-348)||(2877145-2877441)
[»] chr2 (4 HSPs)
chr2 (83-348)||(44223121-44223386)
chr2 (83-337)||(44233943-44234197)
chr2 (83-348)||(44210959-44211224)
chr2 (264-346)||(43457695-43457777)
[»] chr7 (11 HSPs)
chr7 (123-348)||(39589312-39589537)
chr7 (150-316)||(39353487-39353653)
chr7 (150-223)||(39338737-39338810)
chr7 (150-223)||(39366090-39366163)
chr7 (150-223)||(39564290-39564363)
chr7 (150-193)||(39547511-39547554)
chr7 (150-200)||(42171840-42171890)
chr7 (150-214)||(42133047-42133111)
chr7 (150-193)||(39538053-39538096)
chr7 (138-207)||(1084835-1084904)
chr7 (138-223)||(39575089-39575174)
[»] chr1 (2 HSPs)
chr1 (104-337)||(2160835-2161068)
chr1 (282-340)||(2149030-2149088)
[»] chr3 (2 HSPs)
chr3 (273-346)||(49773102-49773175)
chr3 (150-223)||(49773225-49773298)


Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 17 - 348
Target Start/End: Original strand, 2897133 - 2897464
Alignment:
Q  17 atgaatatctaaatgaatgaatctagtaaaaaacagaaaaatcacaaagtgtcttgagctttaaatactaacctttctggaattggaatcaacttctgct 116  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2897133 atgaatatctaaatcaatgaatctagtaaaaaacagaaaaatcacaaagtgtcttgagctttaaatactaacctttctggaattggaatcaacttctgct 2897232  T
Q  117 agtaaacgaagccaggccgagtagaccaatgactcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacg 216  Q
     ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2897233 ggtaaacgaagccaggccgagtagaccattgactcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacg 2897332  T
Q  217 tttcttgtcttttaaggtagcctgaaatttttatggtgccgtcgatataaccaccggttttcctaccagccaaaacatccattaaagtagttttaccagc 316  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2897333 tttcttgtcttttaaggtagcctgaaatttttatggtgccatcgatataaccaccggtttttctaccagccaaaacatccattaaagtagttttaccagc 2897432  T
Q  317 tccactaactcccattaaagctgtgagaacac 348  Q
    |||||||||||||||||| |||||||||||||    
T  2897433 tccactaactcccattaatgctgtgagaacac 2897464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 45 - 348
Target Start/End: Complemental strand, 2887211 - 2886912
Alignment:
Q  45 aaaaacagaaaaatcacaaagtgtcttgagctttaaatactaacctttctggaattggaatcaacttctgctagtaaacgaagccaggccgagtagacca 144  Q
    ||||||||||||||||    |||||||||| |||||||||| |||||||||| ||| |||||||| |||||| |||||||||||||||||||||||||||    
T  2887211 aaaaacagaaaaatca----gtgtcttgagttttaaatacttacctttctggtatttgaatcaacgtctgctggtaaacgaagccaggccgagtagacca 2887116  T
Q  145 atgactcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgtcttttaaggtagcctgaaat 244  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| || |||||    
T  2887115 gtgactcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaat 2887016  T
Q  245 ttttatggtgccgtcgatataaccaccggttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaagctgtgaga 344  Q
    ||||||| | ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2887015 ttttatgctcccgtcaatataaccaccagttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggctgtgaga 2886916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 52 - 348
Target Start/End: Complemental strand, 2877441 - 2877145
Alignment:
Q  52 gaaaaatcacaaagtgtcttgagctttaaatactaacctttctggaattggaatcaacttctgctagtaaacgaagccaggccgagtagaccaatgactc 151  Q
    ||||||| | || |||||| ||||  ||||||||||||||||||| ||||||||||||||||||  ||||||||||||| || || || |  || |||||    
T  2877441 gaaaaatgataaggtgtctggagcagtaaatactaacctttctggtattggaatcaacttctgccggtaaacgaagccaagctgaatacagtaaggactc 2877342  T
Q  152 atagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgtcttttaaggtagcctgaaatttttatg 251  Q
    |||||||||||| ||||| || ||||||||||||||||||||||| |||||||||| |||||| ||||||||  ||||| |||| || ||||||||||||    
T  2877341 atagacagtaacttgaggggagtggatatcattctgctcacaatagccagagattctagcaaatgtttcttgctttttagggtaaccagaaatttttatg 2877242  T
Q  252 gtgccgtcgatataaccaccggttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaagctgtgagaacac 348  Q
     | || || ||||||||||  ||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  2877241 ctcccatcaatataaccactagttttcctaccagccaatacatccatcaaagtagttttaccagctccactaacacccatcaaagctgtgagaacac 2877145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 83 - 348
Target Start/End: Original strand, 44223121 - 44223386
Alignment:
Q  83 actaacctttctggaattggaatcaacttctgctagtaaacgaagccaggccgagtagaccaatgactcatagacagtaacatgaggagaatggatatca 182  Q
    ||||||||||||||  |||||||||||| |||   ||||||||||||| ||||| || | ||| |||||||| || |||||||| || ||||||||||||    
T  44223121 actaacctttctggtgttggaatcaactcctgaaggtaaacgaagccacgccgaataaagcaaagactcataaactgtaacatgcggtgaatggatatca 44223220  T
Q  183 ttctgctcacaataaccagagattcgagcaaacgtttcttgtcttttaaggtagcctgaaatttttatggtgccgtcgatataaccaccggttttcctac 282  Q
    ||||||||||| || ||||| |||| |||||| ||||||||  ||||| |||| || ||||  || |||   || || ||||| ||||| ||||||||||    
T  44223221 ttctgctcacagtagccagaaattctagcaaatgtttcttgctttttagggtacccagaaaccttgatgtctccatcaatatatccacctgttttcctac 44223320  T
Q  283 cagccaaaacatccattaaagtagttttaccagctccactaactcccattaaagctgtgagaacac 348  Q
    |||||| ||||||||| | ||| ||||||||||||||||| || ||||| ||||||||||||||||    
T  44223321 cagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaacac 44223386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 83 - 337
Target Start/End: Original strand, 44233943 - 44234197
Alignment:
Q  83 actaacctttctggaattggaatcaacttctgctagtaaacgaagccaggccgagtagaccaatgactcatagacagtaacatgaggagaatggatatca 182  Q
    ||||||||||||||  |||||||||||| |||   ||||||||||||| || ||||| | ||| |||||||| || ||||||||||| ||||||||||||    
T  44233943 actaacctttctggtgttggaatcaactcctgaaggtaaacgaagccacgctgagtaaagcaaagactcataaactgtaacatgaggtgaatggatatca 44234042  T
Q  183 ttctgctcacaataaccagagattcgagcaaacgtttcttgtcttttaaggtagcctgaaatttttatggtgccgtcgatataaccaccggttttcctac 282  Q
    ||||||||||| ||||| ||||||| |||||| ||||||||  ||||| | || || ||||  || |||   || || ||||| ||||| ||||||||||    
T  44234043 ttctgctcacagtaaccggagattctagcaaatgtttcttgctttttaggatacccagaaaccttgatgtctccatcaatatatccacctgttttcctac 44234142  T
Q  283 cagccaaaacatccattaaagtagttttaccagctccactaactcccattaaagc 337  Q
    |||||| ||||||||| | ||| ||||||||||||||||| || ||||| |||||    
T  44234143 cagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagc 44234197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 83 - 348
Target Start/End: Original strand, 44210959 - 44211224
Alignment:
Q  83 actaacctttctggaattggaatcaacttctgctagtaaacgaagccaggccgagtagaccaatgactcatagacagtaacatgaggagaatggatatca 182  Q
    |||||||||||| | ||||||||||||| | |   ||||||||||||| || ||||| |  |  || ||||| || ||||||||||| ||||| ||||||    
T  44210959 actaacctttctagtattggaatcaactccagaaggtaaacgaagccatgctgagtaaagaagggattcataaactgtaacatgaggtgaatgaatatca 44211058  T
Q  183 ttctgctcacaataaccagagattcgagcaaacgtttcttgtcttttaaggtagcctgaaatttttatggtgccgtcgatataaccaccggttttcctac 282  Q
    ||||| ||||| || ||||| |||| |||||| ||||||||  ||||| |||| || ||||  || |||   || || ||||| ||||| ||||||||||    
T  44211059 ttctgttcacagtagccagatattctagcaaatgtttcttgctttttagggtacccagaaaccttgatgtctccatcaatatatccacctgttttcctac 44211158  T
Q  283 cagccaaaacatccattaaagtagttttaccagctccactaactcccattaaagctgtgagaacac 348  Q
    |||||| ||||||||| | ||| ||||||||||||||||| || ||||| ||||||||||||||||    
T  44211159 cagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaacac 44211224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 346
Target Start/End: Original strand, 43457695 - 43457777
Alignment:
Q  264 taaccaccggttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaagctgtgagaac 346  Q
    |||||||| || ||||| ||||| ||||||||||| ||||| || || |||||||||||||||||||||||||| || |||||    
T  43457695 taaccacctgtcttccttccagctaaaacatccatcaaagttgtctttccagctccactaactcccattaaagccgttagaac 43457777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 123 - 348
Target Start/End: Original strand, 39589312 - 39589537
Alignment:
Q  123 cgaagccaggccgagtagaccaatgactcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttctt 222  Q
    |||||||| || || |||| ||| || ||||| ||||||||||||||||| ||||||||||| |||||||| || ||||| ||||  ||||| |||||||    
T  39589312 cgaagccatgctgaatagagcaaagattcatatacagtaacatgaggagagtggatatcattttgctcacagtatccagaaattcttgcaaatgtttctt 39589411  T
Q  223 gtcttttaaggtagcctgaaatttttatggtgccgtcgatataaccaccggttttcctaccagccaaaacatccattaaagtagttttaccagctccact 322  Q
    |  | ||| | || || |||||| | ||||| ||  | ||||| ||||| ||||| |||||||  |  |||||||  ||||||||||| ||||| ||  |    
T  39589412 gcttcttaggatatccagaaattgtgatggtcccaccaatatatccaccagtttttctaccagaaagcacatccaacaaagtagtttttccagcacccgt 39589511  T
Q  323 aactcccattaaagctgtgagaacac 348  Q
     || ||||||||||| ||||||||||    
T  39589512 gacgcccattaaagcagtgagaacac 39589537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 316
Target Start/End: Complemental strand, 39353653 - 39353487
Alignment:
Q  150 tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgtcttttaaggtagcctgaaattttta 249  Q
    |||||||||||||||| |||||||||||||||| | |||||||| || ||||| ||||  ||||| ||||||||  ||||  | ||||| |||||| | |    
T  39353653 tcatagacagtaacataaggagaatggatatcagtttgctcacagtatccagaaattcttgcaaaggtttcttgcttttttggatagccggaaattgtga 39353554  T
Q  250 tggtgccgtcgatataaccaccggttttcctaccagccaaaacatccattaaagtagttttaccagc 316  Q
    || | ||  | ||||| ||||||||||| |||||||  |  |||||||||| ||| ||||| |||||    
T  39353553 tgttcccaccaatatatccaccggtttttctaccagaaagcacatccattagagttgtttttccagc 39353487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 39338810 - 39338737
Alignment:
Q  150 tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttg 223  Q
    ||||||||||||||||||||||||||||||||| | |||||||| || ||||| ||||  ||||| ||||||||    
T  39338810 tcatagacagtaacatgaggagaatggatatcagtttgctcacagtatccagaaattcttgcaaaggtttcttg 39338737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 39366163 - 39366090
Alignment:
Q  150 tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttg 223  Q
    ||||||||||||||||||||||||||||||||| | ||||| || || ||||| ||||  ||||| ||||||||    
T  39366163 tcatagacagtaacatgaggagaatggatatcagtttgctcgcagtatccagaaattcttgcaaaggtttcttg 39366090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 39564290 - 39564363
Alignment:
Q  150 tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttg 223  Q
    |||||||||||||||| |||||| ||||||||||| |||||||| || ||||| ||||  ||||| ||||||||    
T  39564290 tcatagacagtaacataaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggtttcttg 39564363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 193
Target Start/End: Original strand, 39547511 - 39547554
Alignment:
Q  150 tcatagacagtaacatgaggagaatggatatcattctgctcaca 193  Q
    ||||||||||||||||||||||||||||||||| | ||||||||    
T  39547511 tcatagacagtaacatgaggagaatggatatcagtttgctcaca 39547554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 42171840 - 42171890
Alignment:
Q  150 tcatagacagtaacatgaggagaatggatatcattctgctcacaataacca 200  Q
    |||||||||||||||||||||||||| ||||||||||| || || ||||||    
T  42171840 tcatagacagtaacatgaggagaatgaatatcattctgttcgcagtaacca 42171890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 42133047 - 42133111
Alignment:
Q  150 tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaa 214  Q
    ||||||||||| ||||  |||||||| |||||||| |||||||||||||||  || |||||||||    
T  42133047 tcatagacagttacatagggagaatgaatatcattttgctcacaataaccactgactcgagcaaa 42133111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 193
Target Start/End: Original strand, 39538053 - 39538096
Alignment:
Q  150 tcatagacagtaacatgaggagaatggatatcattctgctcaca 193  Q
    |||||||||||||||| |||||||||||||||| | ||||||||    
T  39538053 tcatagacagtaacataaggagaatggatatcagtttgctcaca 39538096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 1084835 - 1084904
Alignment:
Q  138 tagaccaatgactcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattc 207  Q
    |||| ||| ||||| |||||||||| ||||||||||||||||||  | |||||||| || ||||| ||||    
T  1084835 tagagcaaagactcgtagacagtaaaatgaggagaatggatatctatttgctcacagtatccagaaattc 1084904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 39575089 - 39575174
Alignment:
Q  138 tagaccaatgactcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttg 223  Q
    |||| ||| ||||||||||| |||| ||||||||| || |||||||| |||||||| || || || ||||  ||||| ||||||||    
T  39575089 tagagcaaagactcatagaccgtaatatgaggagagtgtatatcattttgctcacagtatccggaaattcttgcaaaggtttcttg 39575174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 337
Target Start/End: Original strand, 2160835 - 2161068
Alignment:
Q  104 atcaacttctgctagtaaacgaagccaggccgagtagaccaatgactcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagag 203  Q
    ||||||||| | | ||||||||||||| ||||| || | ||| || ||||| || ||||||| ||| ||||||||||||   ||||| ||||| || ||     
T  2160835 atcaacttcaggtggtaaacgaagccatgccgaatataacaaagattcataaactgtaacattaggtgaatggatatcaaattgctcgcaatatcccgat 2160934  T
Q  204 attcgagcaaacgtttcttgtcttttaaggtagcctgaaatttttatggtgccgtcgatataaccaccggttttcctaccagccaaaacatccattaaag 303  Q
    || |||||||| |||| |||  | ||  | ||||| || ||| | ||| | || || ||||| ||||| |||||||| ||||| ||||||||||||| ||    
T  2160935 atgcgagcaaatgttttttgattctttggatagccggatattgtgatgtttccatcaatatatccaccagttttccttccagctaaaacatccattagag 2161034  T
Q  304 tagttttaccagctccactaactcccattaaagc 337  Q
    |||| || || || ||||| || ||||| |||||    
T  2161035 tagtctttccggcaccacttacacccatcaaagc 2161068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 340
Target Start/End: Original strand, 2149030 - 2149088
Alignment:
Q  282 ccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaagctgt 340  Q
    ||||| |||||||||||||||||||| || ||||| ||||| || ||||| ||||||||    
T  2149030 ccagctaaaacatccattaaagtagtctttccagcaccacttacacccatcaaagctgt 2149088  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 346
Target Start/End: Complemental strand, 49773175 - 49773102
Alignment:
Q  273 gttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaagctgtgagaac 346  Q
    |||||||| |||| ||  |||||||||| ||| ||||||||||||||||| |  ||||||| |||||| |||||    
T  49773175 gttttccttccagacagcacatccattagagttgttttaccagctccacttatacccattagagctgtcagaac 49773102  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 49773298 - 49773225
Alignment:
Q  150 tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttg 223  Q
    ||||||||||||||||| ||||| ||||||||| | |||||||| || || || || |||| ||| ||||||||    
T  49773298 tcatagacagtaacatggggagagtggatatcagtttgctcacagtatcctgatatccgagaaaatgtttcttg 49773225  T

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