View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20573_low_29 (Length: 357)
Name: NF20573_low_29
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_low_29 |
 | |
|
| [»] scaffold0493 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 9 - 340
Target Start/End: Original strand, 44999724 - 45000055
Alignment:
| Q |
9 |
gtgagatgaagatgagagatgatgcttcttggagtactatgattgttgggtttgctaaaagtggttcttttcatgatgcgtttgcgttttttaaggagtt |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44999724 |
gtgaaatgaagatgagagatgatgcttcttggagtactatgattgttgggtttgctaaaagtggttcttttcatgatgcgtttgggttttttaaggagtt |
44999823 |
T |
|
| Q |
109 |
gttgcgggacagaaataggccgagtgaggttagtcttactggggtgttatccgcatgtgcacaggctggggcatttgagtttgggaagattttacatggg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44999824 |
gttgcgggacagaaataggccgagtgaggttagtcttactggggtgttatccgcatgtgcacaggctggggcatttgagtttgggaagattttacatggg |
44999923 |
T |
|
| Q |
209 |
tttatggaaaaagcggggtttctttgtattgtttcagttaacaatgctctcattgatacttactcgaagtgtggaaatgttgatatggctaagttggtct |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44999924 |
tttatggaaaaagcggggtttctttgtattgtttcagttaacaatgctctcattgatacttactcgaagtgtggaaatgttgatatggctaagttggtct |
45000023 |
T |
|
| Q |
309 |
ttcaacatatgtctgcggaaaagtgcattgtg |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
45000024 |
ttcaacatatgtctgcggaaaagtgcattgtg |
45000055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0493 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: scaffold0493
Description:
Target: scaffold0493; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 9 - 340
Target Start/End: Original strand, 2701 - 3031
Alignment:
| Q |
9 |
gtgagatgaagatgagagatgatgcttcttggagtactatgattgttgggtttgctaaaagtggttcttttcatgatgcgtttgcgttttttaaggagtt |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2701 |
gtgaaatgaagatgagagatgatgcttcttggagtactatgattgttgggtttgctaaaagtggttcttttcatgatgcgtttgggttttttaaggagtt |
2800 |
T |
|
| Q |
109 |
gttgcgggacagaaataggccgagtgaggttagtcttactggggtgttatccgcatgtgcacaggctggggcatttgagtttgggaagattttacatggg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2801 |
gttgcgggacagaaataggccgagtgaggttagtcttactggggtgttatccgcatgtgcacaggctggggcatttgagtttgggaagattttacatggg |
2900 |
T |
|
| Q |
209 |
tttatggaaaaagcggggtttctttgtattgtttcagttaacaatgctctcattgatacttactcgaagtgtggaaatgttgatatggctaagttggtct |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2901 |
tttatggaaaaagcggggtttctttgtattgtttcagttaacaatgctctcattgatacttactcgaagtgtggaaatgttgatatggctaagttggtc- |
2999 |
T |
|
| Q |
309 |
ttcaacatatgtctgcggaaaagtgcattgtg |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
3000 |
ttcaacatatgtctgcggaaaagtgcattgtg |
3031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University