View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20573_low_3 (Length: 608)

Name: NF20573_low_3
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20573_low_3
NF20573_low_3
[»] chr4 (5 HSPs)
chr4 (17-608)||(2895955-2896547)
chr4 (259-542)||(2888063-2888346)
chr4 (280-519)||(2878582-2878821)
chr4 (47-215)||(2887838-2888005)
chr4 (66-207)||(2878334-2878475)
[»] chr2 (6 HSPs)
chr2 (274-497)||(44209806-44210029)
chr2 (280-497)||(44232827-44233044)
chr2 (273-497)||(44222001-44222225)
chr2 (67-212)||(44222320-44222465)
chr2 (67-190)||(44210141-44210264)
chr2 (67-169)||(44233183-44233285)
[»] chr7 (17 HSPs)
chr7 (91-149)||(39573967-39574025)
chr7 (367-425)||(1083597-1083655)
chr7 (367-425)||(39563083-39563141)
chr7 (373-426)||(39573621-39573674)
chr7 (384-433)||(39620948-39620997)
chr7 (383-425)||(39339874-39339916)
chr7 (383-425)||(39354695-39354737)
chr7 (383-425)||(39546290-39546332)
chr7 (85-130)||(39588464-39588509)
chr7 (76-140)||(39367000-39367064)
chr7 (81-149)||(39563358-39563426)
chr7 (383-425)||(39536975-39537017)
chr7 (388-425)||(39367301-39367338)
chr7 (90-130)||(1084088-1084128)
chr7 (76-140)||(39339556-39339620)
chr7 (76-140)||(39354397-39354461)
chr7 (386-422)||(39588132-39588168)
[»] chr1 (1 HSPs)
chr1 (90-134)||(2159897-2159941)


Alignment Details
Target: chr4 (Bit Score: 537; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 17 - 608
Target Start/End: Complemental strand, 2896547 - 2895955
Alignment:
Q  17 taacaataattcttgttggtagctaatatgctaatattttctgttgttttagagcatcgaaggggttagtaaaattaaagatggctataatccagcaact 116  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2896547 taaccataattcttgttggtagctaatatgctaatattttctgttgttttagagcatcgaaggggttagtaaaattaaagatggctataatccagcaact 2896448  T
Q  117 tggatgttggaagttacaagttcagcacaagaacatactttaggtgttgattttcatgatatatacaaaaattctgagttgtacaggtaagctaatttaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2896447 tggatgttggaagttacaagttcagcacaagaacatactttaggtgttgattttcatgatatatacaaaaattctgagttgtacaggtaagctaatttaa 2896348  T
Q  217 gagct-atagtataaataatattattgtaacaatatatacttacactgatataaactactctttaggagaaacaagcaacttatagtagaattgggcaaa 315  Q
    || || ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  2896347 gaacttatagtataaataataatattgtaacaatatatacttacactgatataaactattctttaggagaaacaagcaacttatagtagaattaggcaaa 2896248  T
Q  316 cctactcctggttctaaggatcttcatttctccgcacaatactcacaatcattttggatccaatgcttggcttgcttatggaaacaacattggtcatact 415  Q
    ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2896247 cctgctcctggttctaaggatcttcatttctccgcccaatactcacaatcattttggatccaatgcttggcttgcctatggaaacaacattggtcatact 2896148  T
Q  416 ggcgcaatccgccatacactgctgtgaggtttttcttcactactttcatagcattgatgtttggaacaatgttctggaaccttggaaggaaatagtaagt 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2896147 ggcgcaatccgccatacactgctgtgaggtttttcttcactactttcatagcattgatgtttggaacaatgttctggaaccttggaaggaaatagtaagt 2896048  T
Q  516 gaaacttcattatctgaaaaataagaaatattatagttagtccgattttctttccaacttgaatgttaacttcttttgatgatgtccatctca 608  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||    
T  2896047 gaaacttcattatgtgaaaaataagaaatattatagttagtccgattttctttccaacttgaatgttaacttcttttgttgatttccagctca 2895955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 259 - 542
Target Start/End: Original strand, 2888063 - 2888346
Alignment:
Q  259 cactgatataaactactctttaggagaaacaagcaacttatagtagaattgggcaaacctactcctggttctaaggatcttcatttctccgcacaatact 358  Q
    ||||| ||||||||| | || |||||||||||||||||||||| |||||| ||||||||| | |||||||| || |||||| ||||||| || |||||||    
T  2888063 cactgttataaactattgttcaggagaaacaagcaacttatagaagaattaggcaaacctgcacctggttcaaatgatctttatttctctgcccaatact 2888162  T
Q  359 cacaatcattttggatccaatgcttggcttgcttatggaaacaacattggtcatactggcgcaatccgccatacactgctgtgaggtttttcttcactac 458  Q
    ||||||||||||   ||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||      
T  2888163 cacaatcatttttagtccaatgtttggcttgcttatggaaacaacattggtcatattggcgcaacccgccatacacttctgtgaggtttttcttcactgt 2888262  T
Q  459 tttcatagcattgatgtttggaacaatgttctggaaccttggaaggaaatagtaagtgaaacttcattatctgaaaaataagaa 542  Q
    ||||||||  ||||||||||||||||| || ||| | |||||||||||||||||||||||  ||||||||||||||||||||||    
T  2888263 tttcataggcttgatgtttggaacaatattttgggatcttggaaggaaatagtaagtgaactttcattatctgaaaaataagaa 2888346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 280 - 519
Target Start/End: Original strand, 2878582 - 2878821
Alignment:
Q  280 aggagaaacaagcaacttatagtagaattgggcaaacctactcctggttctaaggatcttcatttctccgcacaatactcacaatcattttggatccaat 379  Q
    |||||||| ||||||||||||| ||||||||| |||||| ||| |||||| ||||||||| ||||| |    |||||||||||||||||||   | ||||    
T  2878582 aggagaaataagcaacttatagaagaattgggaaaacctgctcttggttccaaggatctttatttccctagccaatactcacaatcatttttagttcaat 2878681  T
Q  380 gcttggcttgcttatggaaacaacattggtcatactggcgcaatccgccatacactgctgtgaggtttttcttcactactttcatagcattgatgtttgg 479  Q
    ||||||||||||| |||||||||| ||||||||| |||||||| |||  |||||||||||| ||||||| |||  |||||||||||||||||||||||||    
T  2878682 gcttggcttgcttgtggaaacaacgttggtcatattggcgcaacccgttatacactgctgttaggttttactttgctactttcatagcattgatgtttgg 2878781  T
Q  480 aacaatgttctggaaccttggaaggaaatagtaagtgaaa 519  Q
    ||||||||| ||| |||| ||| | |||||||||||||||    
T  2878782 aacaatgttttgggacctcggacgcaaatagtaagtgaaa 2878821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 47 - 215
Target Start/End: Original strand, 2887838 - 2888005
Alignment:
Q  47 ctaatattttctgttgttttagagcatcgaaggggttagtaaaattaaagatggctataatccagcaacttggatgttggaagttacaagttcagcacaa 146  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  2887838 ctaatattttctgttgttt-agagcattgaaggggttagtaaaatcaaagatggctataatccagcaacttggatgttggaagtttcgagttcagcacaa 2887936  T
Q  147 gaacatactttaggtgttgattttcatgatatatacaaaaattctgagttgtacaggtaagctaattta 215  Q
    |||| |||| ||||  ||||||||||| ||  |||||||||||||||||||||||||||||| ||||||    
T  2887937 gaacttactctaggaattgattttcatcatgcatacaaaaattctgagttgtacaggtaagcaaattta 2888005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 66 - 207
Target Start/End: Original strand, 2878334 - 2878475
Alignment:
Q  66 tagagcatcgaaggggttagtaaaattaaagatggctataatccagcaacttggatgttggaagttacaagttcagcacaagaacatactttaggtgttg 165  Q
    ||||| || ||||| || |||||||| || ||||| ||||| |||||||| |||||||| ||||| || ||| |||||||||||  | | ||||||| ||    
T  2878334 tagagtattgaaggagtaagtaaaataaacgatggatataacccagcaacatggatgttagaagtgacgagtccagcacaagaagttgcattaggtgctg 2878433  T
Q  166 attttcatgatatatacaaaaattctgagttgtacaggtaag 207  Q
    |||||||||| |||||||||||||||||| | || |||||||    
T  2878434 attttcatgagatatacaaaaattctgagctatataggtaag 2878475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 274 - 497
Target Start/End: Complemental strand, 44210029 - 44209806
Alignment:
Q  274 ctctttaggagaaacaagcaacttatagtagaattgggcaaacctactcctggttctaaggatcttcatttctccgcacaatactcacaatcattttgga 373  Q
    ||||| ||||||||||||||||||||   |||| | |||   ||| |||||||||| ||||||||||||||| |  | |||| ||| || || || | |     
T  44210029 ctcttcaggagaaacaagcaacttattcaagaacttggcgtgcctgctcctggttcaaaggatcttcatttccctactcaattctcgcagtctttcttgg 44209930  T
Q  374 tccaatgcttggcttgcttatggaaacaacattggtcatactggcgcaatccgccatacactgctgtgaggtttttcttcactactttcatagcattgat 473  Q
    ||||||||  ||| |||||||||||||||| ||||||||| ||||| ||||| ||||||||||||||||||||||||||||| || |||||||| |||||    
T  44209929 tccaatgccaggcctgcttatggaaacaacgttggtcatattggcgtaatccaccatacactgctgtgaggtttttcttcacgacattcatagccttgat 44209830  T
Q  474 gtttggaacaatgttctggaacct 497  Q
    ||||||||||||||||||| ||||    
T  44209829 gtttggaacaatgttctgggacct 44209806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 280 - 497
Target Start/End: Complemental strand, 44233044 - 44232827
Alignment:
Q  280 aggagaaacaagcaacttatagtagaattgggcaaacctactcctggttctaaggatcttcatttctccgcacaatactcacaatcattttggatccaat 379  Q
    ||||||||||||||||||||   |||| |  ||  |||| |||||||||| ||||||||||||||| |  | |||| ||| || || || | | ||||||    
T  44233044 aggagaaacaagcaacttattcaagaacttagcgtacctgctcctggttcaaaggatcttcatttccctactcaattctcgcagtctttcttggtccaat 44232945  T
Q  380 gcttggcttgcttatggaaacaacattggtcatactggcgcaatccgccatacactgctgtgaggtttttcttcactactttcatagcattgatgtttgg 479  Q
    ||  ||| |||||||||||||||| ||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||||  |||||||||||    
T  44232944 gccaggcctgcttatggaaacaacgttggtcatattggcgtaatccaccatacactgctgtgaggtttttcttcactacattcataggcttgatgtttgg 44232845  T
Q  480 aacaatgttctggaacct 497  Q
    ||||||||||||| ||||    
T  44232844 aacaatgttctgggacct 44232827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 273 - 497
Target Start/End: Complemental strand, 44222225 - 44222001
Alignment:
Q  273 actctttaggagaaacaagcaacttatagtagaattgggcaaacctactcctggttctaaggatcttcatttctccgcacaatactcacaatcattttgg 372  Q
    |||||| ||||||||||||||||||||   |||| |  ||   ||| |||||||||| ||||||||||||||| |  | |||| ||| || || || | |    
T  44222225 actcttcaggagaaacaagcaacttattcaagaacttagcgtgcctgctcctggttcaaaggatcttcatttccctactcaattctcgcagtctttcttg 44222126  T
Q  373 atccaatgcttggcttgcttatggaaacaacattggtcatactggcgcaatccgccatacactgctgtgaggtttttcttcactactttcatagcattga 472  Q
     | ||||||  ||| |||||||||||||||| ||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||||  ||||    
T  44222125 gttcaatgccaggcctgcttatggaaacaacgttggtcatattggcgtaatccaccatacactgctgtgaggtttttcttcactaccttcataggcttga 44222026  T
Q  473 tgtttggaacaatgttctggaacct 497  Q
    |||||||||||||||||||| ||||    
T  44222025 tgtttggaacaatgttctgggacct 44222001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 67 - 212
Target Start/End: Complemental strand, 44222465 - 44222320
Alignment:
Q  67 agagcatcgaaggggttagtaaaattaaagatggctataatccagcaacttggatgttggaagttacaagttcagcacaagaacatactttaggtgttga 166  Q
    ||||||| || || ||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||| | |||||||||||| || ||| ||||||||    
T  44222465 agagcattgacggagttagtaaaatcaaagatggatataacccagcaacatggatgttggaagttacaactacagcacaagaacttaatttgggtgttga 44222366  T
Q  167 ttttcatgatatatacaaaaattctgagttgtacaggtaagctaat 212  Q
     |||   ||| | ||||||||||| || || || |||||| |||||    
T  44222365 ctttaccgatttgtacaaaaattcagatttatataggtaaactaat 44222320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 190
Target Start/End: Complemental strand, 44210264 - 44210141
Alignment:
Q  67 agagcatcgaaggggttagtaaaattaaagatggctataatccagcaacttggatgttggaagttacaagttcagcacaagaacatactttaggtgttga 166  Q
    ||||||| || || || |||||||| ||||| || ||||| |||||||| ||||||||||||||||||| | | |||||||||| || ||| ||||||||    
T  44210264 agagcattgacggagtgagtaaaatcaaagacggatataacccagcaacatggatgttggaagttacaactaccgcacaagaacttaatttgggtgttga 44210165  T
Q  167 ttttcatgatatatacaaaaattc 190  Q
    ||||   ||| | |||||||||||    
T  44210164 ttttaccgatttgtacaaaaattc 44210141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 44233285 - 44233183
Alignment:
Q  67 agagcatcgaaggggttagtaaaattaaagatggctataatccagcaacttggatgttggaagttacaagttcagcacaagaacatactttaggtgttga 166  Q
    ||||||| || || || |||||||| ||||| || ||||| |||||||| ||||||||||||||||||| | | |||||||||| || ||| || |||||    
T  44233285 agagcattgacggagtgagtaaaatcaaagacggatataacccagcaacatggatgttggaagttacaactaccgcacaagaacttaatttgggcgttga 44233186  T
Q  167 ttt 169  Q
    |||    
T  44233185 ttt 44233183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 39574025 - 39573967
Alignment:
Q  91 ttaaagatggctataatccagcaacttggatgttggaagttacaagttcagcacaagaa 149  Q
    ||||||||||||| ||||||||||||||||||||||||||||| || |||||| |||||    
T  39574025 ttaaagatggctacaatccagcaacttggatgttggaagttactagctcagcaaaagaa 39573967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 367 - 425
Target Start/End: Complemental strand, 1083655 - 1083597
Alignment:
Q  367 ttttggatccaatgcttggcttgcttatggaaacaacattggtcatactggcgcaatcc 425  Q
    |||||||  |||||| ||||||| |||||||||||||||||||| ||||||||||||||    
T  1083655 ttttggacacaatgcatggcttgtttatggaaacaacattggtcttactggcgcaatcc 1083597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 367 - 425
Target Start/End: Complemental strand, 39563141 - 39563083
Alignment:
Q  367 ttttggatccaatgcttggcttgcttatggaaacaacattggtcatactggcgcaatcc 425  Q
    |||||||  |||||| |||||||||||||||||||||||||||| || |||||||||||    
T  39563141 ttttggacacaatgcatggcttgcttatggaaacaacattggtcttattggcgcaatcc 39563083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 373 - 426
Target Start/End: Complemental strand, 39573674 - 39573621
Alignment:
Q  373 atccaatgcttggcttgcttatggaaacaacattggtcatactggcgcaatccg 426  Q
    ||||||||  ||||||| |||||||||||||||||||| |||||||||||||||    
T  39573674 atccaatgtatggcttgtttatggaaacaacattggtcttactggcgcaatccg 39573621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 384 - 433
Target Start/End: Complemental strand, 39620997 - 39620948
Alignment:
Q  384 ggcttgcttatggaaacaacattggtcatactggcgcaatccgccataca 433  Q
    ||||||||||||||||||||||||||| |||||||| ||||||| |||||    
T  39620997 ggcttgcttatggaaacaacattggtcttactggcggaatccgcgataca 39620948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 425
Target Start/End: Original strand, 39339874 - 39339916
Alignment:
Q  383 tggcttgcttatggaaacaacattggtcatactggcgcaatcc 425  Q
    |||||||||||||||||||||||||||| || |||||||||||    
T  39339874 tggcttgcttatggaaacaacattggtcttattggcgcaatcc 39339916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 425
Target Start/End: Original strand, 39354695 - 39354737
Alignment:
Q  383 tggcttgcttatggaaacaacattggtcatactggcgcaatcc 425  Q
    |||||||||||||||||||||||||||| || |||||||||||    
T  39354695 tggcttgcttatggaaacaacattggtcttattggcgcaatcc 39354737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 425
Target Start/End: Complemental strand, 39546332 - 39546290
Alignment:
Q  383 tggcttgcttatggaaacaacattggtcatactggcgcaatcc 425  Q
    ||||||| |||||||||||||||||||| ||||||||||||||    
T  39546332 tggcttgtttatggaaacaacattggtcttactggcgcaatcc 39546290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 39588509 - 39588464
Alignment:
Q  85 gtaaaattaaagatggctataatccagcaacttggatgttggaagt 130  Q
    |||| ||||||||||| |||||||||||||||||||| ||||||||    
T  39588509 gtaacattaaagatggatataatccagcaacttggattttggaagt 39588464  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 39367000 - 39367064
Alignment:
Q  76 aaggggttagtaaaattaaagatggctataatccagcaacttggatgttggaagttacaagttca 140  Q
    |||| ||||| || |||||||| || |||||||||||||| |||||||||||||| |||| ||||    
T  39367000 aaggtgttagcaagattaaagacggttataatccagcaacatggatgttggaagtcacaacttca 39367064  T

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Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 39563426 - 39563358
Alignment:
Q  81 gttagtaaaattaaagatggctataatccagcaacttggatgttggaagttacaagttcagcacaagaa 149  Q
    ||||| || |||||||| || |||||||||||||| |||||||||||||| |||| |||| || |||||    
T  39563426 gttagcaagattaaagacggttataatccagcaacatggatgttggaagtcacaacttcatcaaaagaa 39563358  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 425
Target Start/End: Complemental strand, 39537017 - 39536975
Alignment:
Q  383 tggcttgcttatggaaacaacattggtcatactggcgcaatcc 425  Q
    ||||||| || ||||||||||||||||| ||||||||||||||    
T  39537017 tggcttgtttgtggaaacaacattggtcctactggcgcaatcc 39536975  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 425
Target Start/End: Original strand, 39367301 - 39367338
Alignment:
Q  388 tgcttatggaaacaacattggtcatactggcgcaatcc 425  Q
    ||||||||||||||||||||||| || |||||||||||    
T  39367301 tgcttatggaaacaacattggtcttattggcgcaatcc 39367338  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 1084128 - 1084088
Alignment:
Q  90 attaaagatggctataatccagcaacttggatgttggaagt 130  Q
    |||||||| || |||||||||||||| ||||||||||||||    
T  1084128 attaaagacggttataatccagcaacatggatgttggaagt 1084088  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 39339556 - 39339620
Alignment:
Q  76 aaggggttagtaaaattaaagatggctataatccagcaacttggatgttggaagttacaagttca 140  Q
    |||| ||||| || || ||||| || |||||||||||||| |||||||||||||| |||| ||||    
T  39339556 aaggtgttagcaagatcaaagacggttataatccagcaacatggatgttggaagtcacaaattca 39339620  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 39354397 - 39354461
Alignment:
Q  76 aaggggttagtaaaattaaagatggctataatccagcaacttggatgttggaagttacaagttca 140  Q
    |||| ||||| || || ||||| || |||||||||||||| |||||||||||||| |||| ||||    
T  39354397 aaggtgttagaaagatcaaagacggttataatccagcaacatggatgttggaagtcacaacttca 39354461  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 386 - 422
Target Start/End: Complemental strand, 39588168 - 39588132
Alignment:
Q  386 cttgcttatggaaacaacattggtcatactggcgcaa 422  Q
    |||| |||||||||||||||||||| |||||||||||    
T  39588168 cttgtttatggaaacaacattggtcttactggcgcaa 39588132  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 2159941 - 2159897
Alignment:
Q  90 attaaagatggctataatccagcaacttggatgttggaagttaca 134  Q
    ||||||||||| |||||||| ||||| ||||||||||||||||||    
T  2159941 attaaagatggttataatcctgcaacatggatgttggaagttaca 2159897  T

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