View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20573_low_32 (Length: 345)
Name: NF20573_low_32
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 121 - 341
Target Start/End: Complemental strand, 3871082 - 3870858
Alignment:
| Q |
121 |
atagttaatacaactcatccagaaaggag--attttatgcggtaactcagcctatcagggtagtcacttgcattagtgatgttagaagttactctaaatg |
218 |
Q |
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| T |
3871082 |
atagttaatacaactcatctagaagggagggattttatgcggtaactcagcctatcaggatagtcacttgcattagtgatgttataagttactctaaatg |
3870983 |
T |
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| Q |
219 |
atgtagtattgtcgatagcgggctaaaaatatggcaagcaatgttagtgtatgttttttagttattctaattctataa--ataaccaattttaaatatta |
316 |
Q |
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| T |
3870982 |
atgtagtattgtcgatagtgggctaaaaatatggcaagcaatgttagtgtatgttttttagttattctaattctataaatataaccaattttaaatatta |
3870883 |
T |
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| Q |
317 |
ttcaagacgccaaatacccaatttt |
341 |
Q |
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| T |
3870882 |
ttcaagacgtcaaatacccaatttt |
3870858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 297
Target Start/End: Complemental strand, 22754549 - 22754427
Alignment:
| Q |
175 |
agggtagtcacttgcattagtgatgttagaagttactctaaatgatgtagtattgtcgatagcgggctaaaaatatggcaagcaatgttagtgtatgttt |
274 |
Q |
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|||||||| |||| ||||| |||| | ||| | ||| || |||||||| || || ||||| |||| |||||| ||| |||||||||||||||| ||| |
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| T |
22754549 |
agggtagttacttacattaatgatttcagacatgactttacatgatgtaaaatggtagatagtgggcgaaaaatgtggaaagcaatgttagtgtaggttg |
22754450 |
T |
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| Q |
275 |
tttagttattctaattctataaa |
297 |
Q |
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|||||||||| ||| |||||||| |
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| T |
22754449 |
tttagttattataagtctataaa |
22754427 |
T |
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