View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20573_low_36 (Length: 337)
Name: NF20573_low_36
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_low_36 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-172; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 36397576 - 36397268
Alignment:
| Q |
11 |
cacagacagatgcacctttcttccttacacaccctcccgacccatctctactctcataccaatcgcttggaaattttggttcaaaaccaagtaaacatgt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
36397576 |
cacagacagatgcacctttcttccttacacaccctcccgacccatctctactctcataccaatcgcttggaaattttggttcaaaaccaagtaaacacgt |
36397477 |
T |
|
| Q |
111 |
gcacttaaagttctcaaagttcaaagggtcacaattactgtttgatccacacgttccatagttatcacattggtttgttggttctgaccagaacctgttc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36397476 |
gcacttaaagttctcaaagttcaaagggtcacaattactgtttgatccacacgttccatagttatcacattggtttgttggttctgaccagaacctgttc |
36397377 |
T |
|
| Q |
211 |
cattgactcttttgattgttccaagtgaatatttgaatgaaaccagattgctgaacaactaacctagctatgacagacttatcaaacatgtcgtatgaaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36397376 |
cattgactcttttgattgttccaagtgaatatttgaatgaaaccagattgctgaacaactaacctagctatgacagacttatcaaacatgtcgtatgaaa |
36397277 |
T |
|
| Q |
311 |
gtgctacat |
319 |
Q |
| |
|
||||||||| |
|
|
| T |
36397276 |
gtgctacat |
36397268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 36373830 - 36373529
Alignment:
| Q |
18 |
agatgcacctttcttccttacacaccctcccgacccatctctactctcataccaatcgcttggaaattttggttcaaaaccaagtaaacatgtgcactta |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| | ||||||||||||||||||||| ||| ||| || |||||| |
|
|
| T |
36373830 |
agatgcgcctttcttccttacacaccctcctgacccatctcttctctcataccaatcacgtggaaattttggttcaaaacctggtagacaagtacactta |
36373731 |
T |
|
| Q |
118 |
aagttctcaaagttcaaagggtcacaattactgtttgatccacacgttccatagttatcacattggtttgttggttctgaccagaacctgttccattgac |
217 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36373730 |
aagtcctcaaagttcaaagggtcacagttactgtttgatccacaggttccatagttatcacattggtttgttggttcagaccagaacctgttccattgac |
36373631 |
T |
|
| Q |
218 |
tcttttgattgttccaagtgaatatttgaatgaaaccagattgctgaacaactaacctagctatgacagacttatcaaacatgtcgtatgaaagtgctac |
317 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| | |||||| |
|
|
| T |
36373630 |
ttttttgattgttccaagtgaatatttgaaagaaaccagattgctgaacaactatcctagctatgacagacttatcaaacatgttatatgagattgctac |
36373531 |
T |
|
| Q |
318 |
at |
319 |
Q |
| |
|
|| |
|
|
| T |
36373530 |
at |
36373529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 36404502 - 36404219
Alignment:
| Q |
18 |
agatgcacctttcttccttacacaccctcccgacccatctctactctcataccaatcgcttggaaattttggttcaaaaccaagtaaacatgtgcactta |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
36404502 |
agatgcacctttcttccttacacaccctcccgacccatctctactctcataccaatcacgtggaaattttggttcaaaaccaagtaaacaagtgcactta |
36404403 |
T |
|
| Q |
118 |
aagttctcaaagttcaaagggtcacaattactgtttgatccacacgttccatagttatcacattggtttgttggttctgaccagaacctgttccattgac |
217 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||| |||||||||| |
|
|
| T |
36404402 |
aagtcgtcaaagttaaaagggtcacaattactgtttgatccacatgttccatagttatcacattggtctgttggttctgaatagaaccggttccattgat |
36404303 |
T |
|
| Q |
218 |
tcttttgattgttccaagtgaatatttgaatgaaaccagattgctgaacaactaacctagctatgacagacttatcaaacatgt |
301 |
Q |
| |
|
|||||| ||| ||| ||||||||||||| |||||||||||| | ||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
36404302 |
tcttttcattcccccacgtgaatatttgaaagaaaccagattgattaacaactttcctagcgatgacagacttatcaaacatgt |
36404219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 36425989 - 36425681
Alignment:
| Q |
11 |
cacagacagatgcacctttcttccttacacaccctcccgacccatctctactctcataccaatcgcttggaaattttggttcaaaaccaagtaaacatgt |
110 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| || || |||||||||| ||||||||||||||| | ||||||||||||||| |||||||||||||| || |
|
|
| T |
36425989 |
cacaaacagatgcacctttctttcttacacatccacctgacccatctcgactctcataccaatctcgtggaaattttggttcgaaaccaagtaaacaagt |
36425890 |
T |
|
| Q |
111 |
gcacttaaagttctcaaagttcaaagggtcacaattactgtttgatccacacgttccatagttatcacattggtttgttggttctgaccagaacctgttc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| ||||||||| ||||||||| |||||| ||| | || |
|
|
| T |
36425889 |
acacttaaagttctcaaagttcaaagggtcacaattactatttgatccacatgttccgtagttagcacattggtctgttggttcagaccagtaccggctc |
36425790 |
T |
|
| Q |
211 |
cattgactcttttgattgttccaagtgaatatttgaatgaaaccagattgctgaacaactaacctagctatgacagacttatcaaacatgtcgtatgaaa |
310 |
Q |
| |
|
||||| ||||||||| ||| ||| |||||| |||||| |||||||||||||||||| |||| ||||| |||||| |||||| |||||||| ||||| | |
|
|
| T |
36425789 |
cattggctcttttgactgtcccacgtgaatgtttgaaagaaaccagattgctgaaccactaccctagtaatgacatacttattaaacatgttatatgaga |
36425690 |
T |
|
| Q |
311 |
gtgctacat |
319 |
Q |
| |
|
||||||||| |
|
|
| T |
36425689 |
gtgctacat |
36425681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 36411823 - 36411515
Alignment:
| Q |
11 |
cacagacagatgcacctttcttccttacacaccctcccgacccatctctactctcataccaatcgcttggaaattttggttcaaaaccaagtaaacatgt |
110 |
Q |
| |
|
|||| |||||||||||| | || |||||||| |||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| || |
|
|
| T |
36411823 |
cacaaacagatgcacctctttttcttacacatcctcccaacccatctctactctcataccaatcacgtggaaattttggttcaaaaccaagtaaacaagt |
36411724 |
T |
|
| Q |
111 |
gcacttaaagttctcaaagttcaaagggtcacaattactgtttgatccacacgttccatagttatcacattggtttgttggttctgaccagaacctgttc |
210 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||| |||||| ||||||||| ||||||||| |||||| ||| | || |
|
|
| T |
36411723 |
acacttaaagctctcaaagttcaaagggtcacaattactgtttggtccacatgttccgtagttagcacattggtctgttggttcagaccagtaccggctc |
36411624 |
T |
|
| Q |
211 |
cattgactcttttgattgttccaagtgaatatttgaatgaaaccagattgctgaacaactaacctagctatgacagacttatcaaacatgtcgtatgaaa |
310 |
Q |
| |
|
|||||||||| |||| ||| ||| ||||| |||||| |||||||||||||||||| |||| ||| | ||||||||||||| |||||||| ||||| | |
|
|
| T |
36411623 |
cattgactctcttgactgtcccacatgaatgtttgaaagaaaccagattgctgaaccactatccttgtaatgacagacttattaaacatgttatatgaga |
36411524 |
T |
|
| Q |
311 |
gtgctacat |
319 |
Q |
| |
|
||| ||||| |
|
|
| T |
36411523 |
gtgatacat |
36411515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 36417154 - 36416846
Alignment:
| Q |
11 |
cacagacagatgcacctttcttccttacacaccctcccgacccatctctactctcataccaatcgcttggaaattttggttcaaaaccaagtaaacatgt |
110 |
Q |
| |
|
|||| |||||||||||| | || |||||||| |||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| || |
|
|
| T |
36417154 |
cacaaacagatgcacctctttttcttacacatcctcccaacccatctctactctcataccaatcacgtggaaattttggttcaaaaccaagtaaacaagt |
36417055 |
T |
|
| Q |
111 |
gcacttaaagttctcaaagttcaaagggtcacaattactgtttgatccacacgttccatagttatcacattggtttgttggttctgaccagaacctgttc |
210 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||| |||||| ||||||||| ||||||||| |||||| ||| | || |
|
|
| T |
36417054 |
acacttaaagctctcaaagttcaaagggtcacaattactgtttggtccacatgttccgtagttagcacattggtctgttggttcagaccagtaccggctc |
36416955 |
T |
|
| Q |
211 |
cattgactcttttgattgttccaagtgaatatttgaatgaaaccagattgctgaacaactaacctagctatgacagacttatcaaacatgtcgtatgaaa |
310 |
Q |
| |
|
|||||||||| |||| ||| ||| ||||| |||||| |||||||||||||||||| |||| ||| | ||||||||||||| |||||||| ||||| | |
|
|
| T |
36416954 |
cattgactctcttgactgtcccacatgaatgtttgaaagaaaccagattgctgaaccactatccttgtaatgacagacttattaaacatgttatatgaga |
36416855 |
T |
|
| Q |
311 |
gtgctacat |
319 |
Q |
| |
|
||| ||||| |
|
|
| T |
36416854 |
gtgatacat |
36416846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 23 - 319
Target Start/End: Complemental strand, 36369206 - 36368910
Alignment:
| Q |
23 |
cacctttcttccttacacaccctcccgacccatctctactctcataccaatcgcttggaaattttgg-ttcaaaaccaagtaaacatgtgcacttaaagt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| | |||||||||||||||||| ||||||||||||| |
|
|
| T |
36369206 |
cacctttcttccttacacaccctcccgacccatctcta-tctcataccaatcacgtggaaatttttgcttcaaaaccaagtaaacaagtgcacttaaagt |
36369108 |
T |
|
| Q |
122 |
tctcaaagttcaaagggtcacaattactgtttgatccacacgttccatagttatcacattggtttgttggttctgaccagaacctgttccattgactctt |
221 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||| ||| ||||||||| ||||| |
|
|
| T |
36369107 |
cttcaaagttaaaaaggtcacaattactgtttgatccacaggttccatagttatcacattggtctgttggttcagaccagtaccggttccattggctctt |
36369008 |
T |
|
| Q |
222 |
ttgattgttccaagtgaatatttgaatgaaaccagattgctgaacaactaacctagctatgacagacttatcaaacatgtcgtatgaaagtgctacat |
319 |
Q |
| |
|
|||| ||| ||| ||||| |||||| |||||||||||||||||| ||| |||| |||||||||||||| ||||||| || | ||||||||||| |
|
|
| T |
36369007 |
ttgactgtcccacatgaatgtttgaaagaaaccagattgctgaaccgctattctagtaatgacagacttatcgaacatgttatacgtaagtgctacat |
36368910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 11 - 301
Target Start/End: Complemental strand, 36433846 - 36433556
Alignment:
| Q |
11 |
cacagacagatgcacctttcttccttacacaccctcccgacccatctctactctcataccaatcgcttggaaattttggttcaaaaccaagtaaacatgt |
110 |
Q |
| |
|
|||| ||||||| ||| |||||||||||||||||||| |||||||||| ||||||||||||||||| |||| |||| |||||||||||| ||||||| | |
|
|
| T |
36433846 |
cacaaacagatgaaccgttcttccttacacaccctcctgacccatctccactctcataccaatcgcctggagatttgggttcaaaaccaggtaaacaagc |
36433747 |
T |
|
| Q |
111 |
gcacttaaagttctcaaagttcaaagggtcacaattactgtttgatccacacgttccatagttatcacattggtttgttggttctgaccagaacctgttc |
210 |
Q |
| |
|
|| || |||| | ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| |||| |
|
|
| T |
36433746 |
acatttgaagtccgcaaagttcatagggtcacaattactgtttgatccacatgttccatagttatcacattggtttgttggttgtgaatagaactggttc |
36433647 |
T |
|
| Q |
211 |
cattgactcttttgattgttccaagtgaatatttgaatgaaaccagattgctgaacaactaacctagctatgacagacttatcaaacatgt |
301 |
Q |
| |
|
|||||||| |||| ||||| ||| | |||||||||| |||||||||||||||||| || | ||||| | |||||||||||||| ||||| |
|
|
| T |
36433646 |
cattgactttttttattgtcccacattaatatttgaaagaaaccagattgctgaaccaccatcctagtaacgacagacttatcaaccatgt |
36433556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 25 - 319
Target Start/End: Complemental strand, 36387783 - 36387488
Alignment:
| Q |
25 |
cctttcttccttacacaccctcccgacccatct-ctactctcataccaatcgcttggaaattttggttcaaaaccaagtaaacatgtgcacttaaagttc |
123 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||| ||| ||||||||| | ||||||||| |||||| ||||||||||||| | |||||||||| |
|
|
| T |
36387783 |
cctttcttccttacacaccctcccgtcccatcttctattctgataccaatcacgtggaaatttgggttcataaccaagtaaacaagaacacttaaagtca |
36387684 |
T |
|
| Q |
124 |
tcaaagttcaaagggtcacaattactgtttgatccacacgttccatagttatcacattggtttgttggttctgaccagaacctgttccattgactctttt |
223 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||| |||||||||||| |||||| || | |||||| |||||| ||| | ||||||| | | ||| |
|
|
| T |
36387683 |
tcaaagttaaaagggtcacaattaccatttgatccacatgttccatagttaccacattcgtcagatggttcagaccagcaccggctccattggcccgttt |
36387584 |
T |
|
| Q |
224 |
gattgttccaagtgaatatttgaatgaaaccagattgctgaacaactaacctagctatgacagacttatcaaacatgtcgtatgaaagtgctacat |
319 |
Q |
| |
|
|| ||| ||| ||||| |||||| ||||||||||||||||| |||| ||||| ||||||||||||| | ||||||| ||||| | |||||||| |
|
|
| T |
36387583 |
gactgtcccacctgaatgtttgaaggaaaccagattgctgaatcactaccctagttatgacagacttagcgaacatgttatatgagaatgctacat |
36387488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University