View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20573_low_4 (Length: 600)
Name: NF20573_low_4
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 13 - 585
Target Start/End: Original strand, 3214958 - 3215529
Alignment:
| Q |
13 |
catcatcaagagttttcttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3214958 |
catcatcaagagttttcttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctc |
3215057 |
T |
|
| Q |
113 |
aacaacagagataactggactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatcatcaattgaagcaagattg |
212 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215058 |
aacaacagagataactggactataaccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatcatcaattgaagcaagattg |
3215157 |
T |
|
| Q |
213 |
tctataagattgcgagtacgaatgagatactcttgtaccgtacgattatcaaacgaggtagcgcgcaattcaacacgaatgttgtcttgcctttgcaagc |
312 |
Q |
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|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
3215158 |
tctataagattgcgagtatgaatgagatactcttgcaccgtacgattatcaaacgaggtagcacgcaattcaacacgaa-gttgtcttgcctttgcaagc |
3215256 |
T |
|
| Q |
313 |
atctgcttttgaaaataggtcacaagtttgttctagagtttatacgcatgcgaagaaccaacgacacgcaccaccagaaagagtagatagaagccaggac |
412 |
Q |
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| T |
3215257 |
atttgcttttgaaaataggtcacaagtttgttctagagtttatacgcatgcgaagaaccaacgacacgcaccaccagaaagagtagatagaagccaggac |
3215356 |
T |
|
| Q |
413 |
agtagcatctggtctttgagacgccaatgacggtactcaagattgagttttccagtagcgcgatcttgcgcagtgagaaaacgcggcggaatgattggag |
512 |
Q |
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| T |
3215357 |
agtagcatctggtctttgagatgccaatgacggtactcaagattgagttttccagtagcgcgatcttgcgcagtgagaaaacgcggcggaatgatcggag |
3215456 |
T |
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| Q |
513 |
caacaagatattcatcgagattgtttgcattcacatacggttcaacttgatgacaccaaacaacgagggaatt |
585 |
Q |
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| T |
3215457 |
caacaagatattcatcgagattgtttgcattcacatatggttcaacttgttgacaccaaacaacgagggaatt |
3215529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 8e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 12 - 495
Target Start/End: Original strand, 32460471 - 32460962
Alignment:
| Q |
12 |
acatcatcaagagttttcttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactct |
111 |
Q |
| |
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|||||||||| ||| |||||||||||||||||||||||||| ||||||||||||| |||||| || |||||||| || |||||| ||||| || || | |
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| T |
32460471 |
acatcatcaatagtcttcttcttgaacttgtcaagacgagtctcatgagcaattaacagagactctacctcatcaatatcaatagtgtcaaatttgcttt |
32460570 |
T |
|
| Q |
112 |
caacaacagagataactggactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatcatcaattg-aagcaagat |
210 |
Q |
| |
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||||||| || || ||||||||||| | |||||||||||||| ||||| |||||||| |||||| | | |||| ||||||| |||| | ||||||||| |
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| T |
32460571 |
caacaactgaaatcactggactatactcttgtggtaaaccttctaaaattacatctaaatgctgagtaatgggaactggatcaccaatggaaagcaagat |
32460670 |
T |
|
| Q |
211 |
tgtctataagattgcgagtacgaatgagatactcttgtaccgtacgattatcaaacgaggtagcgcgcaattcaacacgaatgttgtcttgcctttgcaa |
310 |
Q |
| |
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| || || | ||||||| | |||| |||| ||| ||||||||||||||||||| || |||| |||| ||||||||| | || |||||||||||| |
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| T |
32460671 |
tatcaattaaattgcgaatgcgaagaagatgctcctgtaccgtacgattatcaagagaagtagaacgcagttcaacacgta-actgccttgcctttgcac |
32460769 |
T |
|
| Q |
311 |
gcatctgcttttgaaaataggtcacaagtttgttctagagtttatacgcatgcgaagaaccaacgacacgcac--------caccagaaagagtagatag |
402 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||| | ||| ||||| |||||| | |
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| T |
32460770 |
gcatctgcttgtgaaaataggtcacaagtttgttccgaagttcatacgcatgcgaagaaccaacaacacgtgcaagaatctcactggaaagggtagattg |
32460869 |
T |
|
| Q |
403 |
aagccaggacagtagcatctggtctttgagacgccaatgacggtactcaagattgagttttccagtagcgcgatcttgcgcagtgagaaaacg |
495 |
Q |
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|||||||||||| |||||||| || ||||||||||| || || ||||| ||||||||||||| || |||| |||||| |||||||||||||| |
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| T |
32460870 |
aagccaggacaggagcatctgatccttgagacgccattggcgaaactcaggattgagttttccggtggcgcaatcttgtgcagtgagaaaacg |
32460962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 362
Target Start/End: Original strand, 36399448 - 36399779
Alignment:
| Q |
30 |
ttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctcaacaacagagataactg |
129 |
Q |
| |
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|||||||| || |||||||| ||||||||||||| || ||||| ||||| || || | ||||||||||||||| || || || || ||||| ||||| | |
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| T |
36399448 |
ttcttgaatttatcaagacgtgtttcatgagcaagaagaagagactcaacttcgtcaacgtcaataacatcaaatttgctttccactacagatataacag |
36399547 |
T |
|
| Q |
130 |
gactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatcatcaattgaagcaagattgtctataagattgcgagt |
229 |
Q |
| |
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||||| | | || ||||||||||| ||||| ||||| || || ||||| ||||||| |||||| | || || || ||||| || | ||||| ||| | |
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| T |
36399548 |
gactaaaatcttgcggtaaaccttctaaaatcacatccaaatgttgattaacaggaactggatctcctatagaggctagattatcaacaagatcacgaat |
36399647 |
T |
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| Q |
230 |
acgaatgagatactcttgtaccgtacgattatcaaacgaggtagcgcgcaattcaacacgaatgttgtcttgcctttgcaagcatctgcttttgaaaata |
329 |
Q |
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| T |
36399648 |
acgaagaagataatcctgtaccgtaagatttgcaagagaagtagaacgcagttcaacactaa-gttgacgcgccttcgcacgcatctgtttgtgaaaata |
36399746 |
T |
|
| Q |
330 |
ggtcacaagtttgttctagagtttatacgcatg |
362 |
Q |
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| T |
36399747 |
tgccacaagtttatcccaaagttcatacgcatg |
36399779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 52665850 - 52665923
Alignment:
| Q |
30 |
ttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaa |
103 |
Q |
| |
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|||||||| || |||||||| ||||||||||||| || ||||| ||||| || || ||||||||||||||||| |
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| T |
52665850 |
ttcttgaatttatcaagacgtgtttcatgagcaagaagaagagactcaacttcgtcaatgtcaataacatcaaa |
52665923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 186
Target Start/End: Original strand, 24789296 - 24789452
Alignment:
| Q |
30 |
ttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctcaacaacagagataactg |
129 |
Q |
| |
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| T |
24789296 |
ttcttgaatttatcaagacgtgtttcatgagtaagaagaagagactcaacttcgtcaacgtcaataacatcaaatttgctttccactacaaatataatag |
24789395 |
T |
|
| Q |
130 |
gactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaa |
186 |
Q |
| |
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||||| | | |||||||||||||| ||||| ||||| || || ||||| ||||||| |
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|
| T |
24789396 |
gactaaaatcttgtggtaaaccttctaaaatcacatccaaatgttgattaacaggaa |
24789452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 464 - 504
Target Start/End: Original strand, 24789737 - 24789777
Alignment:
| Q |
464 |
ccagtagcgcgatcttgcgcagtgagaaaacgcggcggaat |
504 |
Q |
| |
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||||||||||||||||||||| |||||||||| || ||||| |
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| T |
24789737 |
ccagtagcgcgatcttgcgcattgagaaaacgaggaggaat |
24789777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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