View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20573_low_43 (Length: 297)

Name: NF20573_low_43
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20573_low_43
NF20573_low_43
[»] chr8 (2 HSPs)
chr8 (18-290)||(37928311-37928583)
chr8 (142-237)||(13784210-13784305)
[»] chr3 (6 HSPs)
chr3 (144-231)||(7834068-7834155)
chr3 (152-241)||(19561457-19561546)
chr3 (144-196)||(39714828-39714880)
chr3 (144-196)||(39943774-39943826)
chr3 (152-198)||(25252918-25252964)
chr3 (142-195)||(2868834-2868887)
[»] chr7 (6 HSPs)
chr7 (144-193)||(39429503-39429552)
chr7 (144-197)||(18250688-18250741)
chr7 (144-197)||(17026040-17026093)
chr7 (144-197)||(20259972-20260025)
chr7 (149-197)||(31490742-31490790)
chr7 (144-196)||(43052328-43052380)
[»] chr4 (6 HSPs)
chr4 (163-240)||(54625836-54625913)
chr4 (144-197)||(51409156-51409209)
chr4 (151-196)||(52705639-52705684)
chr4 (144-196)||(44377651-44377703)
chr4 (144-196)||(49820424-49820476)
chr4 (152-196)||(50711491-50711535)
[»] chr6 (3 HSPs)
chr6 (152-197)||(13311393-13311438)
chr6 (128-196)||(6998622-6998690)
chr6 (163-227)||(8597464-8597528)
[»] scaffold0316 (1 HSPs)
scaffold0316 (144-196)||(18756-18808)
[»] chr1 (1 HSPs)
chr1 (144-198)||(21681664-21681718)
[»] scaffold0444 (1 HSPs)
scaffold0444 (144-196)||(1455-1507)
[»] chr5 (4 HSPs)
chr5 (144-196)||(18879666-18879718)
chr5 (152-196)||(28430595-28430639)
chr5 (144-196)||(31620007-31620059)
chr5 (144-196)||(32157427-32157479)


Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 37928311 - 37928583
Alignment:
Q  18 gttatttacatgaaatattatctatgatttaagcaaatccatcataattttaataagttcgttaactaaatttgctaaacttgatatagtttgacttgtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37928311 gttatttacatgaaatattatctatgatttaagcaaatccatcataattttaataagttcgttaactaaatttgctaaacttgatatagtttgacttgtt 37928410  T
Q  118 tgattcaagttgttcgtgaactttaatcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgagtttaaacgagtttgactcaac 217  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37928411 tgattcaagttgtttgtgaactttaatcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgagtttaaacgagtttgactcaac 37928510  T
Q  218 tcgattcatttccaaccctaattgggacgaaaaatcttaaatgacacttgatttgaaatgaatgaagtattat 290  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37928511 tcgattcatttccaaccctaattgggacgaaaaatcttaaatgatacttgatttgaaatgaatgaagtattat 37928583  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 13784305 - 13784210
Alignment:
Q  142 aatcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgagtttaaacgagtttgactcaactcgattcatttccaacccta 237  Q
    |||||| |||||||||| ||||||||||||  ||||||||| ||||||||||||| | | ||  ||| ||||| |||||| ||||||||| |||||    
T  13784305 aatcgtttcaaactcgagtcaagttttgagccgaaccaatttttatcgagtcgagctcagacaggttcgactcgactcgaatcatttccagcccta 13784210  T

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Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 144 - 231
Target Start/End: Complemental strand, 7834155 - 7834068
Alignment:
Q  144 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgagtttaaacgagtttgactcaactcgattcatttcca 231  Q
    |||| ||||||||||||  ||||||||| |||||||||||||||||||||||||| | ||  ||| ||||| |||||| |||||||||    
T  7834155 tcgtttcaaactcgaattgagttttgagctgaaccaattcttatcgagtcgagttcagacaggttcgactcgactcgactcatttcca 7834068  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 241
Target Start/End: Original strand, 19561457 - 19561546
Alignment:
Q  152 aactcgaatcaagttttgagttgaaccaattcttatcgagtcgagtttaaacgagtttgactcaactcgattcatttccaaccctaattg 241  Q
    |||||||||| ||||||||  | ||| |||||||||||||||||| | | |||| ||  |||| |||||| ||||||||| |||||||||    
T  19561457 aactcgaatcgagttttgaactaaactaattcttatcgagtcgagctcagacgaattcaactcgactcgactcatttccagccctaattg 19561546  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 39714880 - 39714828
Alignment:
Q  144 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgag 196  Q
    ||||||| ||||||| | |||||||||||||||| ||||||||| ||||||||    
T  39714880 tcgtgtcgaactcgagtaaagttttgagttgaactaattcttattgagtcgag 39714828  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 39943774 - 39943826
Alignment:
Q  144 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgag 196  Q
    |||||||||||||||  | ||||| ||| ||||||||||||||||||||||||    
T  39943774 tcgtgtcaaactcgagccgagtttcgagctgaaccaattcttatcgagtcgag 39943826  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 25252964 - 25252918
Alignment:
Q  152 aactcgaatcaagttttgagttgaaccaattcttatcgagtcgagtt 198  Q
    ||||||| || |||||||||  |||||||||||||||||||||||||    
T  25252964 aactcgagtcgagttttgagccgaaccaattcttatcgagtcgagtt 25252918  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 2868834 - 2868887
Alignment:
Q  142 aatcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcga 195  Q
    |||||| |||||||| | || |||||| ||||||||||||| ||||||||||||    
T  2868834 aatcgtatcaaactctagtcgagttttaagttgaaccaatttttatcgagtcga 2868887  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 39429552 - 39429503
Alignment:
Q  144 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtc 193  Q
    ||||||| |||||||||||||||| |||| ||||||||||||||||||||    
T  39429552 tcgtgtcgaactcgaatcaagtttcgagtcgaaccaattcttatcgagtc 39429503  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 18250688 - 18250741
Alignment:
Q  144 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgagt 197  Q
    |||| |||||||||| |||||||| |||  ||||||||||||||||||||||||    
T  18250688 tcgtttcaaactcgagtcaagtttcgagccgaaccaattcttatcgagtcgagt 18250741  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 17026040 - 17026093
Alignment:
Q  144 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgagt 197  Q
    |||| |||||||||| || ||||| |||  ||||||||||||||||||||||||    
T  17026040 tcgtttcaaactcgagtcgagtttcgagccgaaccaattcttatcgagtcgagt 17026093  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 20259972 - 20260025
Alignment:
Q  144 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgagt 197  Q
    ||||||| |||||||  | |||||| || |||||||||||||||||||||||||    
T  20259972 tcgtgtcgaactcgagccgagttttaagctgaaccaattcttatcgagtcgagt 20260025  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 31490790 - 31490742
Alignment:
Q  149 tcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgagt 197  Q
    |||||||||| |||| ||||||| |||||||||||||||| ||| ||||    
T  31490790 tcaaactcgagtcaaattttgagctgaaccaattcttatcaagttgagt 31490742  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 43052380 - 43052328
Alignment:
Q  144 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgag 196  Q
    ||||||| |||||||  ||||||| |||  |||||||||||||||||||||||    
T  43052380 tcgtgtcgaactcgagccaagtttcgagccgaaccaattcttatcgagtcgag 43052328  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 54625836 - 54625913
Alignment:
Q  163 agttttgagttgaaccaattcttatcgagtcgagtttaaacgagtttgactcaactcgattcatttccaaccctaatt 240  Q
    ||||||||||||||||||||||||| |||||||| |  ||| | || ||||| |||||| |||||||||||| |||||    
T  54625836 agttttgagttgaaccaattcttattgagtcgagctcgaacaaattcgactcgactcgactcatttccaaccataatt 54625913  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 51409156 - 51409209
Alignment:
Q  144 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgagt 197  Q
    ||||||| |||||||||| ||||| |||  |||| |||||||||||||||||||    
T  51409156 tcgtgtcgaactcgaatcgagtttcgagccgaacaaattcttatcgagtcgagt 51409209  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 52705684 - 52705639
Alignment:
Q  151 aaactcgaatcaagttttgagttgaaccaattcttatcgagtcgag 196  Q
    ||||||||||| ||||| |||  |||||||||||||||||||||||    
T  52705684 aaactcgaatcgagtttcgagccgaaccaattcttatcgagtcgag 52705639  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 44377703 - 44377651
Alignment:
Q  144 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgag 196  Q
    |||| |||||||||| || ||||| |||  |||||||||||||||||||||||    
T  44377703 tcgtttcaaactcgagtcgagtttcgagccgaaccaattcttatcgagtcgag 44377651  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 49820476 - 49820424
Alignment:
Q  144 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgag 196  Q
    ||||||| ||||||| || ||||| |||  |||||||||||||||||||||||    
T  49820476 tcgtgtcgaactcgagtcgagtttcgagccgaaccaattcttatcgagtcgag 49820424  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 50711491 - 50711535
Alignment:
Q  152 aactcgaatcaagttttgagttgaaccaattcttatcgagtcgag 196  Q
    |||||||| | |||||||||  |||||||||||||||||||||||    
T  50711491 aactcgaaccgagttttgagccgaaccaattcttatcgagtcgag 50711535  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 13311438 - 13311393
Alignment:
Q  152 aactcgaatcaagttttgagttgaaccaattcttatcgagtcgagt 197  Q
    |||||||| | |||||||||| ||||||||||||||||||||||||    
T  13311438 aactcgaaccgagttttgagtcgaaccaattcttatcgagtcgagt 13311393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 6998690 - 6998622
Alignment:
Q  128 tgttcgtgaactttaatcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgag 196  Q
    |||||||||||||||| || ||| ||||||| || ||||| |||  || | ||||||||||||||||||    
T  6998690 tgttcgtgaactttaaacgagtcgaactcgagtcgagtttcgagccgagcaaattcttatcgagtcgag 6998622  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 8597464 - 8597528
Alignment:
Q  163 agttttgagttgaaccaattcttatcgagtcgagtttaaacgagtttgactcaactcgattcatt 227  Q
    ||||||||| |||||||||||||||| ||||||| ||| | || ||||| || |||||| |||||    
T  8597464 agttttgagctgaaccaattcttatctagtcgagcttagaagaatttgaatcgactcgaatcatt 8597528  T

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Target: scaffold0316 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 18808 - 18756
Alignment:
Q  144 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgag 196  Q
    ||||||| |||||||| | |||||||||  |||||||||||||||||||||||    
T  18808 tcgtgtcgaactcgaaccgagttttgagccgaaccaattcttatcgagtcgag 18756  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 21681664 - 21681718
Alignment:
Q  144 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgagtt 198  Q
    ||||||| |||||||  | |||||| || ||||||||||||||||||||||||||    
T  21681664 tcgtgtcgaactcgagccgagttttaagctgaaccaattcttatcgagtcgagtt 21681718  T

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Target: scaffold0444 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 1455 - 1507
Alignment:
Q  144 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgag 196  Q
    |||| |||||||||| || ||||| |||  |||||||||||||||||||||||    
T  1455 tcgtttcaaactcgagtcgagtttcgagccgaaccaattcttatcgagtcgag 1507  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 18879718 - 18879666
Alignment:
Q  144 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgag 196  Q
    ||||||| |||||||  ||||||| |||  |||||||||||||||||||||||    
T  18879718 tcgtgtcgaactcgagccaagtttcgagccgaaccaattcttatcgagtcgag 18879666  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 28430639 - 28430595
Alignment:
Q  152 aactcgaatcaagttttgagttgaaccaattcttatcgagtcgag 196  Q
    ||||||| || ||||||||| ||||| ||||||||||||||||||    
T  28430639 aactcgagtcgagttttgagctgaactaattcttatcgagtcgag 28430595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 31620059 - 31620007
Alignment:
Q  144 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgag 196  Q
    |||||||||||| ||| | ||||||||| |||||||| ||||||||| |||||    
T  31620059 tcgtgtcaaacttgaaccgagttttgagctgaaccaaatcttatcgaatcgag 31620007  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 32157427 - 32157479
Alignment:
Q  144 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgag 196  Q
    ||||||| |||||||  ||||||| |||  |||||||||||||||||||||||    
T  32157427 tcgtgtcgaactcgagccaagtttcgagccgaaccaattcttatcgagtcgag 32157479  T

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