View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20573_low_48 (Length: 268)
Name: NF20573_low_48
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 19343449 - 19343205
Alignment:
| Q |
1 |
ctttatagctaagcctaaatccctttgaggccttttacttggatcctggtattttttcagcaactacatcacacacatgtaagtcataacaattcttagg |
100 |
Q |
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| T |
19343449 |
ctttatagctaagcctaaatccctttgaggccttttacttggatcctggtatttcttcagcaactacatcacacacatgttagtcataacaattcttagg |
19343350 |
T |
|
| Q |
101 |
tgacaagttacaacaaaactatacatatacaatgaagaaacaaagtagtnnnnnnntaagagaaaatcacatctgaaactggagagttctgaacagaatc |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
19343349 |
tgacaagttacaacaaaactatacgtatacaatgaagaaacaaaaatggtgaaaaataagagaaaattacatctgaaactggagagttctgaacagaatc |
19343250 |
T |
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| Q |
201 |
tggtagcttaataggttcatctttccttggaggttctctgctgct |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
19343249 |
tggtagcttaataggttcatctttccttggaggttctctggtgct |
19343205 |
T |
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