View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20573_low_5 (Length: 595)

Name: NF20573_low_5
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20573_low_5
NF20573_low_5
[»] chr1 (10 HSPs)
chr1 (1-301)||(3315414-3315714)
chr1 (301-576)||(3315116-3315391)
chr1 (123-301)||(2926941-2927118)
chr1 (54-120)||(2925528-2925594)
chr1 (49-120)||(2312471-2312542)
chr1 (447-534)||(40020462-40020548)
chr1 (348-437)||(12318338-12318427)
chr1 (440-524)||(3316568-3316652)
chr1 (398-437)||(9109283-9109322)
chr1 (1-33)||(2312422-2312454)
[»] chr6 (1 HSPs)
chr6 (348-430)||(25073833-25073915)
[»] chr4 (5 HSPs)
chr4 (348-430)||(33990115-33990197)
chr4 (355-437)||(41961662-41961744)
chr4 (329-437)||(33090132-33090240)
chr4 (339-422)||(34113067-34113150)
chr4 (355-419)||(26699265-26699329)
[»] chr5 (4 HSPs)
chr5 (350-437)||(14689292-14689379)
chr5 (355-437)||(8445955-8446037)
chr5 (348-429)||(317038-317119)
chr5 (339-437)||(10054621-10054719)
[»] chr3 (2 HSPs)
chr3 (348-437)||(20937921-20938010)
chr3 (385-439)||(5433796-5433849)
[»] chr8 (1 HSPs)
chr8 (440-524)||(10021114-10021198)
[»] chr2 (1 HSPs)
chr2 (363-411)||(36282752-36282800)


Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-166; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 3315714 - 3315414
Alignment:
Q  1 gacaagcaatggatgagttagtgcctacggtttggccctttgtccttcaaacttaatttagtttgaaggaggcaatgttgtgatttttatgcatgaatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3315714 gacaagcaatggatgagttagtgcctacggtttggccctttgtccttcaaacttaatttagtttgaaggaggcaatgttgtgatttttatgcatgaatga 3315615  T
Q  101 atggaaaacctttgggaacttttgagtttgagaaatataaataaatatgcatattgaggtggacaggtggtagtcaaaacaaaagcttgcagttcgtgta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3315614 atggaaaacctttgggaacttttgagtttgagaaatataaataaatatgcatattgaggtggacaggtggtagtcaaaacaaaagcttgcagttcgtgta 3315515  T
Q  201 gattcatgtagcatgttttgatgaaaatattggtagtgagatataacacatttaattgaagaatcttttagtagtttatgaaatgttagaagaagtagtt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3315514 gattcatgtagcatgttttgatgaaaatattggtagtgagatataacacatttaattgaagaatcttttagtagtttatgaaatgttaaaagaagtagtt 3315415  T
Q  301 a 301  Q
    |    
T  3315414 a 3315414  T

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Target: chr1; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 301 - 576
Target Start/End: Complemental strand, 3315391 - 3315116
Alignment:
Q  301 agtaggagacataaagcagtcgttattgtgtgaagtcagtaactctgaatctcgcatcaataaaatttagatatgtaggacaaatatcaatggtaatcaa 400  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3315391 agtaggagacataaagcagtcgttattgtgtgaattcagtaactctgaatctcgcatcaataaaatttagatgtgtaggacaaatatcaatggtaatcaa 3315292  T
Q  401 taaccaaaataaccacaagcaataacaacagatctagtcaaaaaagctataacttgtttgaatctctcccgcttcatccttttgtgactttcatgagttg 500  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3315291 taactaaaataactacaagcaataacaacagatctagtcaaaaaagctataacttgtttgaatctctcccacttcatccttttgtgactttcatgagttg 3315192  T
Q  501 caatgcctttagtttctttgctttgtgtgctcatgacgtttagttttttcgtttcttcaggaaatgaagtactcaa 576  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||    
T  3315191 caatgcctttagtttctttgctttatgcgctcatgacgtttagttttttcgtttcttcaggagatgaagtactcaa 3315116  T

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Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 123 - 301
Target Start/End: Complemental strand, 2927118 - 2926941
Alignment:
Q  123 tgagtttgagaaatataaataaatatgcatattgaggtggacaggtggtagtcaaaacaaaagcttgcagttcg-------tgtagattcatgtagcatg 215  Q
    ||||||||||||||||||||||||||||||||||||||||        ||||||||| |||||||||||||| |       |||||||| ||||||||||    
T  2927118 tgagtttgagaaatataaataaatatgcatattgaggtgg--------tagtcaaaataaaagcttgcagttagcttattgtgtagattaatgtagcatg 2927027  T
Q  216 ttttgatgaaaatattggtagtgagatataacacatttaattgaagaatcttttagtagtttatgaaatgttagaagaagtagtta 301  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    ||||| ||| ||||||||||||    
T  2927026 ttttgatgaaaatattagtagtgagatttaacacatttaattgaagaatcttttagtagtgatagaaatattaaaagaagtagtta 2926941  T

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Target: chr1; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 2925594 - 2925528
Alignment:
Q  54 taatttagtttgaaggaggcaatgttgtgatttttatgcatgaatgaatggaaaacctttgggaact 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2925594 taatttagtttgaaggaggcaatgttgtgatttttatgcatgaatgaatggaaaacctttgggaact 2925528  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 2312471 - 2312542
Alignment:
Q  49 aaacttaatttagtttgaaggaggcaatgttgtgatttttatgcatgaatgaatggaaaacctttgggaact 120  Q
    |||||||||||||| ||||| ||  |||||||||||||||||||||||||||||||||||||||||| ||||    
T  2312471 aaacttaatttagtctgaagaagaaaatgttgtgatttttatgcatgaatgaatggaaaacctttggaaact 2312542  T

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Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 447 - 534
Target Start/End: Original strand, 40020462 - 40020548
Alignment:
Q  447 ctataacttgtttgaatctctcccgcttcatccttttgtgactttcatgagttgcaatgcctttagtttctttgctttgtgtgctcat 534  Q
    ||||||||||||||  || ||||| |||||||||||||||| |||||||||||||||||||||| ||||||||| ||| |||||||||    
T  40020462 ctataacttgtttgcttcactcccccttcatccttttgtgattttcatgagttgcaatgcctttggtttctttg-tttatgtgctcat 40020548  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 348 - 437
Target Start/End: Original strand, 12318338 - 12318427
Alignment:
Q  348 aatctcgcatcaataaaatttagatatgtaggacaaatatcaatggtaatcaataaccaaaataaccacaagcaataacaacagatctag 437  Q
    |||||| ||||||| |||||| |||   | || ||| ||||||||| || ||||||||||||||| |||| |||| ||||||||||||||    
T  12318338 aatctcacatcaatgaaatttggatgcatggggcaagtatcaatggcaaccaataaccaaaataagcacacgcaacaacaacagatctag 12318427  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 524
Target Start/End: Complemental strand, 3316652 - 3316568
Alignment:
Q  440 aaaaaagctataacttgtttgaatctctcccgcttcatccttttgtgactttcatgagttgcaatgcctttagtttctttgcttt 524  Q
    |||||| |||||||||||| | ||||||||  |||||||||||||||| || |||||| |||||  || || |||||||| ||||    
T  3316652 aaaaaatctataacttgttggcatctctcctacttcatccttttgtgatttccatgagctgcaacacccttggtttcttttcttt 3316568  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 437
Target Start/End: Original strand, 9109283 - 9109322
Alignment:
Q  398 caataaccaaaataaccacaagcaataacaacagatctag 437  Q
    ||||||| |||||||||||||| |||||||||||||||||    
T  9109283 caataactaaaataaccacaagtaataacaacagatctag 9109322  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2312422 - 2312454
Alignment:
Q  1 gacaagcaatggatgagttagtgcctacggttt 33  Q
    |||||||||||||||| ||||||||||||||||    
T  2312422 gacaagcaatggatgaattagtgcctacggttt 2312454  T

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Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 348 - 430
Target Start/End: Complemental strand, 25073915 - 25073833
Alignment:
Q  348 aatctcgcatcaataaaatttagatatgtaggacaaatatcaatggtaatcaataaccaaaataaccacaagcaataacaaca 430  Q
    |||||||||| |||||| |||||||  || |||||| |||||||| ||||||||||| ||||||||||||||||| |||||||    
T  25073915 aatctcgcattaataaagtttagattcgtgggacaagtatcaatgataatcaataacaaaaataaccacaagcaacaacaaca 25073833  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 348 - 430
Target Start/End: Complemental strand, 33990197 - 33990115
Alignment:
Q  348 aatctcgcatcaataaaatttagatatgtaggacaaatatcaatggtaatcaataaccaaaataaccacaagcaataacaaca 430  Q
    |||||| || |||| |||| ||||| ||| |||||| ||||||||| |||||||||||||||||| ||||||||| |||||||    
T  33990197 aatctcacaccaatgaaatctagatttgtgggacaagtatcaatggcaatcaataaccaaaataaacacaagcaacaacaaca 33990115  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 437
Target Start/End: Complemental strand, 41961744 - 41961662
Alignment:
Q  355 catcaataaaatttagatatgtaggacaaatatcaatggtaatcaataaccaaaataaccacaagcaataacaacagatctag 437  Q
    ||||||| |||||||||| ||| || ||| ||||||||  || |||||||||||| ||| |||||||| ||||| ||||||||    
T  41961744 catcaatgaaatttagatctgtggggcaagtatcaatgacaaccaataaccaaaaaaactacaagcaacaacaatagatctag 41961662  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 437
Target Start/End: Complemental strand, 33090240 - 33090132
Alignment:
Q  329 tgtgaagtcagtaactctgaatctcgcatcaataaaatttagatatgtaggacaaatatcaatggtaatcaataaccaaaataaccacaagcaataacaa 428  Q
    |||||| || |||||||  |||||| ||||||| |||||| ||| ||| ||  || ||||||||  ||||||||||| |||||||||  ||||| |||||    
T  33090240 tgtgaattcggtaactccaaatctcacatcaatgaaattttgatttgtgggggaagtatcaatgacaatcaataaccgaaataaccaagagcaacaacaa 33090141  T
Q  429 cagatctag 437  Q
    || ||||||    
T  33090140 catatctag 33090132  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 422
Target Start/End: Complemental strand, 34113150 - 34113067
Alignment:
Q  339 gtaactctgaatctcgcatcaataaaatttagatatgtaggacaaatatcaatggtaatcaataaccaaaataaccacaagcaa 422  Q
    |||||||| | ||||  |||||| |||||||||| ||| ||  ||  |||||||  ||||||||||||||||||||||||||||    
T  34113150 gtaactctaattctcatatcaatgaaatttagatgtgtggggtaagaatcaatgacaatcaataaccaaaataaccacaagcaa 34113067  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 419
Target Start/End: Original strand, 26699265 - 26699329
Alignment:
Q  355 catcaataaaatttagatatgtaggacaaatatcaatggtaatcaataaccaaaataaccacaag 419  Q
    ||||||| ||||||||||  || |||||  ||||||||| || ||||||||||| ||||||||||    
T  26699265 catcaatgaaatttagattcgtgggacaggtatcaatggcaaccaataaccaaattaaccacaag 26699329  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 437
Target Start/End: Original strand, 14689292 - 14689379
Alignment:
Q  350 tctcgcatcaataaaatttagatatgtaggacaaatatcaatggtaatcaataaccaaaataaccacaagcaataacaacagatctag 437  Q
    |||| ||| ||| ||||||||||||||||||||| ||| |||   |||||||||||||||||||||| | ||| |||| |||||||||    
T  14689292 tctcacatgaatgaaatttagatatgtaggacaagtattaataacaatcaataaccaaaataaccaccaccaacaacatcagatctag 14689379  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 355 - 437
Target Start/End: Complemental strand, 8446037 - 8445955
Alignment:
Q  355 catcaataaaatttagatatgtaggacaaatatcaatggtaatcaataaccaaaataaccacaagcaataacaacagatctag 437  Q
    ||||||| |||||||||| ||| |||||| ||||||||| ||   |||| ||| |||||||||||||| ||||||||||||||    
T  8446037 catcaatgaaatttagatttgtgggacaagtatcaatggcaactgataatcaagataaccacaagcaacaacaacagatctag 8445955  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 348 - 429
Target Start/End: Complemental strand, 317119 - 317038
Alignment:
Q  348 aatctcgcatcaataaaatttagatatgtaggacaaatatcaatggtaatcaataaccaaaataaccacaagcaataacaac 429  Q
    |||||| ||||||| ||||||||||  || |||||| ||||| ||  || ||||||||||||||||||||||||| ||||||    
T  317119 aatctcacatcaatgaaatttagattcgtgggacaagtatcagtgacaaccaataaccaaaataaccacaagcaacaacaac 317038  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 437
Target Start/End: Original strand, 10054621 - 10054719
Alignment:
Q  339 gtaactctgaatctcgcatcaataaaatttagatatgtaggacaaatatcaatggtaatcaataaccaaaataaccacaagcaataacaacagatctag 437  Q
    |||||| | ||||||  |||||| |||||||||| |||||||||| ||||||||  ||  ||||| ||||||||||||| |||| | ||||| ||||||    
T  10054621 gtaactttaaatctcatatcaatgaaatttagatttgtaggacaagtatcaatgacaactaataatcaaaataaccacatgcaacatcaacaaatctag 10054719  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 348 - 437
Target Start/End: Complemental strand, 20938010 - 20937921
Alignment:
Q  348 aatctcgcatcaataaaatttagatatgtaggacaaatatcaatggtaatcaataaccaaaataaccacaagcaataacaacagatctag 437  Q
    |||||| ||||| |||||||||||| ||| |||||| ||||||||  ||  ||||| ||||||||| |||||||  ||||||| ||||||    
T  20938010 aatctcacatcagtaaaatttagatttgtgggacaagtatcaatgacaactaataagcaaaataactacaagcagcaacaacaaatctag 20937921  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 385 - 439
Target Start/End: Original strand, 5433796 - 5433849
Alignment:
Q  385 tatcaatggtaatcaataaccaaaataaccacaagcaataacaacagatctagtc 439  Q
    ||||||||  || ||||||||||||||||||||||||| ||||||| ||||||||    
T  5433796 tatcaatgacaaccaataaccaaaataaccacaagcaacaacaaca-atctagtc 5433849  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 524
Target Start/End: Complemental strand, 10021198 - 10021114
Alignment:
Q  440 aaaaaagctataacttgtttgaatctctcccgcttcatccttttgtgactttcatgagttgcaatgcctttagtttctttgcttt 524  Q
    |||||| |||||||||||| | ||||||||  ||||| |||||||||| || |||||| |||||  || || |||||||| ||||    
T  10021198 aaaaaatctataacttgttggcatctctcctacttcagccttttgtgatttccatgagctgcaacacccttggtttcttttcttt 10021114  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 36282752 - 36282800
Alignment:
Q  363 aaatttagatatgtaggacaaatatcaatggtaatcaataaccaaaata 411  Q
    ||||||||||||||||||||| ||||||||| ||| ||| | |||||||    
T  36282752 aaatttagatatgtaggacaagtatcaatggcaattaatgatcaaaata 36282800  T

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