View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20573_low_54 (Length: 249)
Name: NF20573_low_54
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 71 - 233
Target Start/End: Complemental strand, 45455919 - 45455757
Alignment:
| Q |
71 |
actctgacacatgcctattccatgatcattgattgttgtcaacaacatgagaatcatttaagattctaattctactgttaattttcnnnnnnnttaaaat |
170 |
Q |
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| T |
45455919 |
actctgacataggccaattccatgatcattgattgttgtcaacaacatgagaatcatttaagattctaattctactgttaattttcaaaaaaattaaaat |
45455820 |
T |
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| Q |
171 |
aaagttggaaatttgggatgcttaggctgagagaaattgtttttcttggttcatgtatatatt |
233 |
Q |
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| T |
45455819 |
aaagttggaaacttgggatgcttaggctgagagaaattgtttttcttggttcatgtatatatt |
45455757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 40165337 - 40165480
Alignment:
| Q |
90 |
ccatgatcattgattgttgtcaacaacatgagaatcatttaagattctaattctactgttaattttcnnnnnnnttaaaataaagttggaaatttgggat |
189 |
Q |
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| T |
40165337 |
ccatgatcattgattgttgtcaacaacatgaggatcatttaagattctaattctactgttatttttcttaaaaattaaaataaagttggaaagttgggat |
40165436 |
T |
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| Q |
190 |
gcttaggctgagagaaattgtttttcttggttcatgtatatatt |
233 |
Q |
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| T |
40165437 |
gcttaggctgagagaaactgtttttcttggttcatgtaaatatt |
40165480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 40165206 - 40165250
Alignment:
| Q |
91 |
catgatcattgattgttgtcaacaacatgagaatcatttaagatt |
135 |
Q |
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| T |
40165206 |
catgatccttgattgctgtcaaaaacatgaggatcatttaagatt |
40165250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 6922175 - 6922216
Alignment:
| Q |
71 |
actctgacacatgcctattccatgatcattgattgttgtcaa |
112 |
Q |
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| T |
6922175 |
actctgacacatgcatattccatgatcattgattgttgtcaa |
6922216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 38237703 - 38237662
Alignment:
| Q |
71 |
actctgacacatgcctattccatgatcattgattgttgtcaa |
112 |
Q |
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| T |
38237703 |
actctgacacatgcttattccatgatcattgattgttgtcaa |
38237662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 40981643 - 40981607
Alignment:
| Q |
37 |
aacatgcttaccctaatttccaacccttaaacctact |
73 |
Q |
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| T |
40981643 |
aacatgcttaccctaatttccaaaccctaaacctact |
40981607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 135
Target Start/End: Complemental strand, 7827204 - 7827154
Alignment:
| Q |
85 |
ctattccatgatcattgattgttgtcaacaacatgagaatcatttaagatt |
135 |
Q |
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||||||||||||| |||||||||| ||||||| |||| |||| |||||||| |
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| T |
7827204 |
ctattccatgatcgttgattgttgacaacaacttgaggatcaattaagatt |
7827154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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