View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20573_low_57 (Length: 248)
Name: NF20573_low_57
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_low_57 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 30448391 - 30448171
Alignment:
| Q |
11 |
attctatacctgatcagacgaggaccattcactttttcttatatttgttcatcttctttattgtgctttgctatatcaatctcgttggcaatgctcaata |
110 |
Q |
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| T |
30448391 |
attctatacctgatcagacgaggaccattcactttttcttatatttgttcatcttctttattgtgctttgctatatcaatcttgttggcgatgctcaata |
30448292 |
T |
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| Q |
111 |
taaatatctaacgagtgtgatttctttgattaaacgaaagagtgaaggtatgttaatgcattgaacatgagtgttgataaaactattatatttaccaatt |
210 |
Q |
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| T |
30448291 |
taaatatctaacaagtgtgatttctttgattaaacgaaagagtgaaggtatgctaatgcattgaacatgagtgttgataaaactattatatttaccaatt |
30448192 |
T |
|
| Q |
211 |
tgttttctccgaatattattt |
231 |
Q |
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||||||||||||||||||||| |
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| T |
30448191 |
tgttttctccgaatattattt |
30448171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 144
Target Start/End: Complemental strand, 30420238 - 30420126
Alignment:
| Q |
33 |
gaccattcactttttcttatatttgttcatcttctttattgtgcttt-gctatatcaatctcgttggcaatgctcaatataaatatctaacgagtgtgat |
131 |
Q |
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||||||| | ||| ||||||||||||||||||||||| ||||||||| | | ||||||| ||||||| ||||||||| ||||||||||||| |||||||| |
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| T |
30420238 |
gaccattaattttgtcttatatttgttcatcttctttgttgtgcttttgttgtatcaatttcgttggaaatgctcaacataaatatctaacaagtgtgat |
30420139 |
T |
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| Q |
132 |
ttctttgattaaa |
144 |
Q |
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||||||||||||| |
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| T |
30420138 |
ttctttgattaaa |
30420126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 144
Target Start/End: Complemental strand, 30432808 - 30432696
Alignment:
| Q |
33 |
gaccattcactttttcttatatttgttcatcttctttattgtgcttt-gctatatcaatctcgttggcaatgctcaatataaatatctaacgagtgtgat |
131 |
Q |
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| T |
30432808 |
gaccattaattttatcttatatttgttcatcttctttcttgtgcttttgctgtatcaatctcgttgacgatgctcaagataaatatccaacaagtgtgat |
30432709 |
T |
|
| Q |
132 |
ttctttgattaaa |
144 |
Q |
| |
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||||||||||||| |
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| T |
30432708 |
ttctttgattaaa |
30432696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 144
Target Start/End: Complemental strand, 30443047 - 30442962
Alignment:
| Q |
59 |
tcatcttctttattgtgctttgctatatcaatctcgttggcaatgctcaatataaatatctaacgagtgtgatttctttgattaaa |
144 |
Q |
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| T |
30443047 |
tcatcttctttgttgtgctttgttgtatcaattttgttggcaatgctcaacataaatcttcgacgagtgtgatttctttgattaaa |
30442962 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 239
Target Start/End: Complemental strand, 30415183 - 30415085
Alignment:
| Q |
145 |
cgaaagagtgaaggtatgttaatgcattgaacatgagtgttgataaaactattatatttaccaa----tttgttttctccgaatattattttctcactt |
239 |
Q |
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|
||||||||||||| ||||||||| | ||||||||| |||| ||||||||||||| |||||||| |||||||||| ||||| | |||||||||||| |
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| T |
30415183 |
cgaaagagtgaagttatgttaatttagtgaacatgattgttaataaaactattatttttaccaattggtttgttttcttcgaatgtcattttctcactt |
30415085 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 30419225 - 30419169
Alignment:
| Q |
183 |
gttgataaaactattatatttaccaatttgttttctccgaatattattttctcactt |
239 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||| | |||||||||||| |
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| T |
30419225 |
gttgataaaactattatttttatcaatttgttttctccgaatgtgattttctcactt |
30419169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 30415936 - 30415880
Alignment:
| Q |
183 |
gttgataaaactattatatttaccaatttgttttctccgaatattattttctcactt |
239 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||| |||||||||||| |
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| T |
30415936 |
gttgataaaactattatttttaccaatttgttttctctgaatgcgattttctcactt |
30415880 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 30431090 - 30431049
Alignment:
| Q |
183 |
gttgataaaactattatatttaccaatttgttttctccgaat |
224 |
Q |
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||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
30431090 |
gttgataaaactattatttttaccaatttattttctccgaat |
30431049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 27655499 - 27655467
Alignment:
| Q |
112 |
aaatatctaacgagtgtgatttctttgattaaa |
144 |
Q |
| |
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||||||||| ||||||||||||||||||||||| |
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| T |
27655499 |
aaatatctatcgagtgtgatttctttgattaaa |
27655467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 30834260 - 30834292
Alignment:
| Q |
112 |
aaatatctaacgagtgtgatttctttgattaaa |
144 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
30834260 |
aaatctctaacgagtgtgatttctttgattaaa |
30834292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 49 - 144
Target Start/End: Original strand, 19592126 - 19592221
Alignment:
| Q |
49 |
ttatatttgttcatcttctttattgtgctttgctatatcaatctcgttggcaatgctcaatataaatatctaacgagtgtgatttctttgattaaa |
144 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||| |||||| | |||||||||||||||||||||||| |
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| T |
19592126 |
ttatatttgttcatcttctttgttgtgctttgctatatcaattttgttggcaatgctcaacataaatcttcgacgagtgtgatttctttgattaaa |
19592221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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