View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20573_low_6 (Length: 506)

Name: NF20573_low_6
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20573_low_6
NF20573_low_6
[»] chr3 (33 HSPs)
chr3 (1-487)||(3745652-3746138)
chr3 (215-420)||(3754458-3754663)
chr3 (218-425)||(4157927-4158137)
chr3 (215-423)||(4142119-4142330)
chr3 (225-422)||(2678385-2678582)
chr3 (227-421)||(2686299-2686496)
chr3 (313-409)||(2696731-2696827)
chr3 (314-409)||(803217-803312)
chr3 (315-430)||(2459233-2459348)
chr3 (361-408)||(2631361-2631408)
chr3 (319-409)||(956343-956433)
chr3 (361-419)||(2644351-2644409)
chr3 (361-419)||(2659141-2659199)
chr3 (319-416)||(1007423-1007520)
chr3 (319-416)||(1022451-1022548)
chr3 (316-408)||(1891064-1891156)
chr3 (320-423)||(989359-989462)
chr3 (319-422)||(7432040-7432143)
chr3 (361-408)||(37753345-37753392)
chr3 (315-360)||(12133037-12133082)
chr3 (361-406)||(13498228-13498273)
chr3 (361-408)||(754609-754656)
chr3 (361-408)||(2492086-2492133)
chr3 (151-190)||(4142346-4142385)
chr3 (315-421)||(968629-968735)
chr3 (350-416)||(1940571-1940637)
chr3 (361-423)||(9587170-9587232)
chr3 (347-404)||(997566-997623)
chr3 (347-404)||(1013956-1014013)
chr3 (315-416)||(1936972-1937073)
chr3 (361-406)||(9561987-9562032)
chr3 (361-409)||(2442043-2442091)
chr3 (151-187)||(3754403-3754439)
[»] chr5 (13 HSPs)
chr5 (215-423)||(11081668-11081879)
chr5 (220-422)||(1427679-1427881)
chr5 (347-416)||(23766854-23766923)
chr5 (347-416)||(23816702-23816771)
chr5 (319-420)||(23861014-23861115)
chr5 (361-406)||(20301447-20301492)
chr5 (355-420)||(23769634-23769699)
chr5 (355-420)||(23819482-23819547)
chr5 (353-407)||(3181713-3181767)
chr5 (361-406)||(20292999-20293044)
chr5 (355-420)||(23732165-23732230)
chr5 (355-420)||(23764248-23764313)
chr5 (355-420)||(23814081-23814146)
[»] chr7 (1 HSPs)
chr7 (223-360)||(1078226-1078363)
[»] chr1 (2 HSPs)
chr1 (356-423)||(51381440-51381507)
chr1 (369-409)||(25609376-25609416)
[»] chr4 (3 HSPs)
chr4 (315-409)||(20019771-20019865)
chr4 (361-409)||(20016184-20016232)
chr4 (347-428)||(22672107-22672188)
[»] scaffold0044 (1 HSPs)
scaffold0044 (356-408)||(89142-89194)
[»] chr8 (1 HSPs)
chr8 (347-423)||(19727871-19727947)
[»] chr2 (3 HSPs)
chr2 (361-409)||(36577370-36577418)
chr2 (78-106)||(11237414-11237442)
chr2 (356-408)||(33038159-33038211)
[»] chr6 (2 HSPs)
chr6 (369-409)||(19119075-19119115)
chr6 (369-409)||(19126369-19126409)


Alignment Details
Target: chr3 (Bit Score: 443; Significance: 0; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Original strand, 3745652 - 3746138
Alignment:
1 attacaaggtggttgttgttcttgtgtacgttatctaccgggatatcaaaactgatatcaaaactgaagtagaagttcatactttgggtaccaatttttg 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3745652 attacaaggtggttgttgttcttgtgtactttatctaccgggatatcaaaactgatatcaaaactgaagtagaagttcatactttgggtaccaatttttg 3745751  T
101 gagaagaagcattcaggagtatcctcttggcggtgctcctgttgagcgataggggaaatttgtgagtggcactattaattggttgttctcnnnnnnnnta 200  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||        ||    
3745752 gagaagaagcactcaggagtatcctcttggcggtgctccttttgagcgatcggggaaatttgtgagtggcactattaattggttgttctcaaaaaaaata 3745851  T
201 aaatcgggtagggtatgtccatgctttattgtttcttttgatttggcaaaggagacttttcaaaagatttcacctcctagtattggaggggtagatgtgt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
3745852 aaatcgggtagggtatgtccatgctttattgtttcttttgatttggcaaaggagacttttcaaaagatttcacctcctagtattggagggatagatgtgt 3745951  T
301 gtgacttgtcgtctttgggtgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggac 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3745952 gtgacttgtcgtctttgggtgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggac 3746051  T
401 taaattgttgactattccttacaagccagaaccaactaattctcatgtacgcgccaaagcagtatatatctttgaggatggtcaagt 487  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3746052 taaattgttgactattccttacaagccagaaccaactaattctcatgtacgcgccaaagcagtatatatctttgaggatggtcaagt 3746138  T

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Target: chr3; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 215 - 420
Target Start/End: Original strand, 3754458 - 3754663
Alignment:
215 atgtccatgctttattgtttcttttgatttggcaaaggagacttttcaaaagatttcacctcctagtattggaggggtagatgtgtgtgacttgtcgtct 314  Q
    ||||||| |||||||||||||||||||||||||||||||| | | |||||||||||||||||||| | | |||||||| |||||||||||| ||||| ||    
3754458 atgtccacgctttattgtttcttttgatttggcaaaggagtcatatcaaaagatttcacctcctaatttgggaggggtggatgtgtgtgacatgtcggct 3754557  T
315 ttgggtgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgacta 414  Q
    ||| ||||||| |||||||||||||||||||||||||||| |||| ||||| ||||||||||||||| |||  |||||||||||||||||||||| ||||    
3754558 ttgagtgttttgagggattgcttgtgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaattgtttacta 3754657  T
415 ttcctt 420  Q
    ||||||    
3754658 ttcctt 3754663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 218 - 425
Target Start/End: Complemental strand, 4158137 - 4157927
Alignment:
218 tccatgctttattgtttcttttgatttggcaaaggagacttttcaaaagatttcacctcctagtattggaggggtagatgtgtgtgacttgtcgtctttg 317  Q
    |||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||| | | |||||||| |||||||||||||||||| |||||    
4158137 tccatgctttattgtttcatttgatttggcaaaggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgtgtgtgacttgtcggctttg 4158038  T
318 ggtgttttaagggattgcttgtgcgtg---acttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgacta 414  Q
    |||||||| ||||||||||||||||||   ||||||||| ||||| ||||| ||||||||||||||| |||  |||||||||||||||||||||| ||||    
4158037 ggtgttttgagggattgcttgtgcgtgaccacttctggttatgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcacta 4157938  T
415 ttccttacaag 425  Q
    |  ||||||||    
4157937 tctcttacaag 4157927  T

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Target: chr3; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 215 - 423
Target Start/End: Complemental strand, 4142330 - 4142119
Alignment:
215 atgtccatgctttattgtttcttttgatttggcaaaggagacttttcaaaagatttcacctcctagtattggaggggtagatgtgtgtgacttgtcgtct 314  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| | | |||||||| |||||  |||||||||||  |    
4142330 atgtccatgctttattgtttcttttgatttggcaaaggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgttggtgacttgtcggtt 4142231  T
315 ttgggtgttttaagggattgcttgtgcgt---gacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttga 411  Q
    ||||||||||| |||||||||||||||||   |||||||||  ||||| ||||| ||||||||||||||| |||  |||||||||||||||||||||| |    
4142230 ttgggtgttttgagggattgcttgtgcgtgacgacttctggctatgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttca 4142131  T
412 ctattccttaca 423  Q
    ||||||||||||    
4142130 ctattccttaca 4142119  T

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Target: chr3; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 225 - 422
Target Start/End: Complemental strand, 2678582 - 2678385
Alignment:
225 tttattgtttcttttgatttggcaaaggagacttttcaaaagatttcacctcctagtattggaggggtagatgtgtgtgacttgtcgtctttgggtgttt 324  Q
    |||||||||||||||||||||||||| ||| ||| ||||||| | ||||||||||||  |||||||| | ||||| || |  || |  | ||||||||||    
2678582 tttattgtttcttttgatttggcaaaagagtcttatcaaaagctatcacctcctagttatggaggggcaaatgtgggtaaaatgcctaccttgggtgttt 2678483  T
325 taagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattccttac 422  Q
    | | ||||||||||||| |||||| |||||||||| ||||| |||||||  |||||| |||  ||||||| |||||||||||||| ||||||||||||    
2678482 tgaaggattgcttgtgcttgacttgtggtgatgatgtttgggttatgaaacaatatggaaaaaaagagtcatggactaaattgttcactattccttac 2678385  T

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Target: chr3; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 227 - 421
Target Start/End: Complemental strand, 2686496 - 2686299
Alignment:
227 tattgtttcttttgatttggcaaaggagacttttcaaaagatttcacctcctagtattggaggggtagatgtgtgtgacttgtcgtctttgggtgtttta 326  Q
    |||||||||||||||||||||||| ||| ||| ||||||||| || |||||||||  ||||||||||||||| ||| || ||    | |||||||||||     
2686496 tattgtttcttttgatttggcaaaagagtcttatcaaaagatatcccctcctagttatggaggggtagatgtctgtaacatgcttaccttgggtgttttg 2686397  T
327 agggattgcttgtgcgtgacttctggtgatgatatttgg---attatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattcctta 421  Q
    |||||||| |||||| |||  | |||||||||| |||||   |||||||||||||||| |||  |||||||||||| ||||||||| |||||||||||    
2686396 agggattgtttgtgcttgatctgtggtgatgatgtttgggttattatgaaggaatatggaaaaaaagagtcttggaataaattgttcactattcctta 2686299  T

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Target: chr3; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 313 - 409
Target Start/End: Complemental strand, 2696827 - 2696731
Alignment:
313 ctttgggtgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgtt 409  Q
    |||||||||| ||||||||||||||| || ||| ||| | | ||||| ||||||||||||||||||||| |||  |||||||||||| |||||||||    
2696827 ctttgggtgtgttaagggattgcttgggcttgatttccgatcatgatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgtt 2696731  T

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Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 314 - 409
Target Start/End: Complemental strand, 803312 - 803217
Alignment:
314 tttgggtgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgtt 409  Q
    ||||||| | || ||||||||||||||| ||| ||||||||||||| ||||| ||||||| ||||||| |||  |||||||||||||||| |||||    
803312 tttgggtatgttgagggattgcttgtgcatgatttctggtgatgatgtttgggttatgaaagaatatggaaataaagagtcttggactaagttgtt 803217  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 430
Target Start/End: Original strand, 2459233 - 2459348
Alignment:
315 ttgggtgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgacta 414  Q
    |||||||| || || |||||||||| | | | ||||||| ||| | ||||||||||||||||||||| |||  ||||||||||||| |||||||| ||      
2459233 ttgggtgtattgagtgattgcttgtccataatttctggtcatgttgtttggattatgaaggaatatggaaataaagagtcttggacaaaattgtttaccg 2459332  T
415 ttccttacaagccaga 430  Q
    || |||||| ||||||    
2459333 tttcttacatgccaga 2459348  T

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Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 408
Target Start/End: Original strand, 2631361 - 2631408
Alignment:
361 tttggattatgaaggaatatgcaaagcaagagtcttggactaaattgt 408  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||    
2631361 tttggattatgaaggaatatggaaatcaagagtcttggactaaattgt 2631408  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 319 - 409
Target Start/End: Original strand, 956343 - 956433
Alignment:
319 gtgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgtt 409  Q
    ||||||| ||||||||||||||| ||| || ||||   ||| ||||||||||||||||||||| |||  |||||||||||  |||||||||    
956343 gtgttttcagggattgcttgtgcatgatttttggttgcgatgtttggattatgaaggaatatggaaaaaaagagtcttggcataaattgtt 956433  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 361 - 419
Target Start/End: Complemental strand, 2644409 - 2644351
Alignment:
361 tttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattcct 419  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||||||  |||||||||    
2644409 tttggattatgaaggagtatggaaatcaagagtcttggactaaattgtacactattcct 2644351  T

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Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 361 - 419
Target Start/End: Complemental strand, 2659199 - 2659141
Alignment:
361 tttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattcct 419  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||||||  |||||||||    
2659199 tttggattatgaaggagtatggaaatcaagagtcttggactaaattgtacactattcct 2659141  T

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Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 416
Target Start/End: Original strand, 1007423 - 1007520
Alignment:
319 gtgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactatt 416  Q
    ||||||| ||||||||||||  ||||  || |||||||||| ||||| | ||||||||||||| |||  | ||||| |||||||||||||| ||||||    
1007423 gtgtttttagggattgcttgaccgtgttttgtggtgatgatgtttgggtaatgaaggaatatggaaataacgagtcctggactaaattgttcactatt 1007520  T

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Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 416
Target Start/End: Original strand, 1022451 - 1022548
Alignment:
319 gtgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactatt 416  Q
    ||||||| ||||||||||||  ||||  || |||||||||| ||||| | ||||||||||||| |||  | ||||| |||||||||||||| ||||||    
1022451 gtgtttttagggattgcttgaccgtgttttgtggtgatgatgtttgggtaatgaaggaatatggaaataacgagtcatggactaaattgttcactatt 1022548  T

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Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 408
Target Start/End: Complemental strand, 1891156 - 1891064
Alignment:
316 tgggtgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgt 408  Q
    ||||||| || |||||||| |||||| ||  || |||| ||||| ||||||||||||||||| ||| |||  |||| ||||||||||||||||    
1891156 tgggtgtgttgagggattgtttgtgcctggtttttggtcatgatgtttggattatgaaggaacatggaaataaagactcttggactaaattgt 1891064  T

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Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 320 - 423
Target Start/End: Original strand, 989359 - 989462
Alignment:
320 tgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattcct 419  Q
    |||||| || |||||||||||| |   ||||||||||||| ||||| | ||||| || || | |||  |||||||||||||||||||||| |||||| ||    
989359 tgttttgagagattgcttgtgcattttttctggtgatgatgtttgggtaatgaaagagtacggaaataaagagtcttggactaaattgttcactatttct 989458  T
420 taca 423  Q
    ||||    
989459 taca 989462  T

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Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 319 - 422
Target Start/End: Complemental strand, 7432143 - 7432040
Alignment:
319 gtgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattcc 418  Q
    |||| |||||||||||||||||| |   | ||||| ||||| |||||| |||||||||||||| |||  |||| || |||||||||||||| || ||| |    
7432143 gtgtattaagggattgcttgtgcatccttgctggtcatgatgtttggagtatgaaggaatatggaaataaagaatcgtggactaaattgttcaccatttc 7432044  T
419 ttac 422  Q
    ||||    
7432043 ttac 7432040  T

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Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 361 - 408
Target Start/End: Complemental strand, 37753392 - 37753345
Alignment:
361 tttggattatgaaggaatatgcaaagcaagagtcttggactaaattgt 408  Q
    ||||||||||| ||||||||| |||| |||||||||||||||||||||    
37753392 tttggattatggaggaatatggaaagaaagagtcttggactaaattgt 37753345  T

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Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 315 - 360
Target Start/End: Original strand, 12133037 - 12133082
Alignment:
315 ttgggtgttttaagggattgcttgtgcgtgacttctggtgatgata 360  Q
    |||||||| |||||||||||||||||| |||||||| |||||||||    
12133037 ttgggtgtgttaagggattgcttgtgcctgacttctcgtgatgata 12133082  T

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Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 13498228 - 13498273
Alignment:
361 tttggattatgaaggaatatgcaaagcaagagtcttggactaaatt 406  Q
    ||||||||||||||||||||| |||  |||||||||||||||||||    
13498228 tttggattatgaaggaatatggaaataaagagtcttggactaaatt 13498273  T

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Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 408
Target Start/End: Complemental strand, 754656 - 754609
Alignment:
361 tttggattatgaaggaatatgcaaagcaagagtcttggactaaattgt 408  Q
    |||||||||||||||| |||| | | ||||||||||||||||||||||    
754656 tttggattatgaaggagtatggagatcaagagtcttggactaaattgt 754609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 408
Target Start/End: Original strand, 2492086 - 2492133
Alignment:
361 tttggattatgaaggaatatgcaaagcaagagtcttggactaaattgt 408  Q
    |||||||||||||||| |||| ||| | ||||||||||||||||||||    
2492086 tttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 2492133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 190
Target Start/End: Complemental strand, 4142385 - 4142346
Alignment:
151 aggggaaatttgtgagtggcactattaattggttgttctc 190  Q
    ||||| |||||||||||||||| |||||||||||||||||    
4142385 agggggaatttgtgagtggcacaattaattggttgttctc 4142346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 421
Target Start/End: Original strand, 968629 - 968735
Alignment:
315 ttgggtgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgacta 414  Q
    |||||||| || |||||||| |||||| ||| |   ||| ||||| ||||| ||||||||||| ||| |||  ||||||| ||||||||||| || ||||    
968629 ttgggtgtgttgagggattgtttgtgcatgattatcggtcatgatgtttgggttatgaaggaacatggaaataaagagtcatggactaaattattcacta 968728  T
415 ttcctta 421  Q
    || ||||    
968729 tttctta 968735  T

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Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 416
Target Start/End: Complemental strand, 1940637 - 1940571
Alignment:
350 tggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactatt 416  Q
    |||| ||||| ||||| ||||||||||| ||| ||| ||||| || |||||||||||||| ||||||    
1940637 tggtcatgatgtttgggttatgaaggaacatggaaatcaagactcgtggactaaattgttcactatt 1940571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 423
Target Start/End: Complemental strand, 9587232 - 9587170
Alignment:
361 tttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattccttaca 423  Q
    ||||||||||||||||||||| |||  ||||| ||||||| |||||||  | |||||||||||    
9587232 tttggattatgaaggaatatggaaataaagagccttggacaaaattgtacaatattccttaca 9587170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 404
Target Start/End: Original strand, 997566 - 997623
Alignment:
347 ttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaa 404  Q
    ||||||||||| | ||||| | ||||||||||||| |||  |||||||||||||||||    
997566 ttctggtgatgttgtttgggtaatgaaggaatatggaaataaagagtcttggactaaa 997623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 404
Target Start/End: Original strand, 1013956 - 1014013
Alignment:
347 ttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaa 404  Q
    ||||||||||| | ||||| | ||||||||||||| |||  |||||||||||||||||    
1013956 ttctggtgatgttgtttgggtaatgaaggaatatggaaataaagagtcttggactaaa 1014013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 416
Target Start/End: Complemental strand, 1937073 - 1936972
Alignment:
315 ttgggtgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgacta 414  Q
    |||||||| || |||||||| |||||| ||  || |||| ||||| ||||| ||||||||||||||  |||  |||| || ||| |||||||||| ||||    
1937073 ttgggtgtgttgagggattgtttgtgcatggtttttggttatgatgtttgggttatgaaggaatataaaaataaagaatcctggtctaaattgttcacta 1936974  T
415 tt 416  Q
    ||    
1936973 tt 1936972  T

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Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 9562032 - 9561987
Alignment:
361 tttggattatgaaggaatatgcaaagcaagagtcttggactaaatt 406  Q
    ||||||||||||| || |||| ||| ||||||||||||||||||||    
9562032 tttggattatgaatgagtatggaaatcaagagtcttggactaaatt 9561987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 409
Target Start/End: Original strand, 2442043 - 2442091
Alignment:
361 tttggattatgaaggaatatgcaaagcaagagtcttggactaaattgtt 409  Q
    |||||||||||||||| |||| |||  |||| |||||||||||||||||    
2442043 tttggattatgaaggagtatggaaataaagattcttggactaaattgtt 2442091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 3754403 - 3754439
Alignment:
151 aggggaaatttgtgagtggcactattaattggttgtt 187  Q
    ||||| |||||||||||||||| ||||||||||||||    
3754403 agggggaatttgtgagtggcacaattaattggttgtt 3754439  T

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Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 215 - 423
Target Start/End: Original strand, 11081668 - 11081879
Alignment:
215 atgtccatgctttattgtttcttttgatttggcaaaggagacttttcaaaagatttcacctcctagtattggaggggtagatgtgtgtgacttgtcgtct 314  Q
    ||||||| |||||||||||| ||| ||||||||||||||| ||| |||||||||||||||||||| | | | |||||| |||||| || |||||||| ||    
11081668 atgtccacgctttattgtttgtttcgatttggcaaaggagtcttatcaaaagatttcacctcctaatttggaaggggtggatgtgcgtaacttgtcggct 11081767  T
315 ttgggtgttttaagggattgcttgtgcgt---gacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttga 411  Q
    ||||||||||| |||||||||||||| ||   |||| || |||||||| ||||| |||||||||| |||| |||  |||||||||||||||||||||| |    
11081768 ttgggtgttttgagggattgcttgtgtgtgacgactactagtgatgatgtttgggttatgaaggagtatggaaataaagagtcttggactaaattgttta 11081867  T
412 ctattccttaca 423  Q
    ||||||||||||    
11081868 ctattccttaca 11081879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 220 - 422
Target Start/End: Complemental strand, 1427881 - 1427679
Alignment:
220 catgctttattgtttcttttgatttggcaaaggagacttttcaaaagatttcacctcctagtattggaggggtagatgtgtgtgacttgtcgtctttggg 319  Q
    |||||||||||||| ||||||||||||  |||||| ||| ||||||| |||  | ||| | |  |||||| ||||||||| ||| ||| ||| | |||||    
1427881 catgctttattgttgcttttgatttggggaaggagtcttatcaaaaggttttgcttccaaatcgtggaggagtagatgtgagtggcttctcgaccttggg 1427782  T
320 tgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattcct 419  Q
    |||| |||||| || ||||| | || ||| |||||||||| ||||| ||||||| || |||| |||   ||||||||||| |||| |||| || ||| ||    
1427781 tgttctaaggggtttcttgtccttgtcttatggtgatgatgtttgggttatgaaagagtatggaaatacagagtcttggattaaactgttcacaatttct 1427682  T
420 tac 422  Q
    |||    
1427681 tac 1427679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 416
Target Start/End: Complemental strand, 23766923 - 23766854
Alignment:
347 ttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactatt 416  Q
    ||||||| ||||| ||||||||||||| ||||||| |||  |||||||||||||||||||||| ||||||    
23766923 ttctggtaatgatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgttcactatt 23766854  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 416
Target Start/End: Complemental strand, 23816771 - 23816702
Alignment:
347 ttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactatt 416  Q
    ||||||| ||||| ||||||||||||| ||||||| |||  |||||||||||||||||||||| ||||||    
23816771 ttctggtaatgatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgttcactatt 23816702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 420
Target Start/End: Complemental strand, 23861115 - 23861014
Alignment:
319 gtgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattcc 418  Q
    ||||||| ||| |||| ||||||  || |||| || ||||| ||||||| |||||||||||||  | | ||| |||||||||||||||||| ||||||||    
23861115 gtgttttcaggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcc 23861016  T
419 tt 420  Q
    ||    
23861015 tt 23861014  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 20301447 - 20301492
Alignment:
361 tttggattatgaaggaatatgcaaagcaagagtcttggactaaatt 406  Q
    ||||||||||||||||||||||||   |||||||||||||||||||    
20301447 tttggattatgaaggaatatgcaattaaagagtcttggactaaatt 20301492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 355 - 420
Target Start/End: Complemental strand, 23769699 - 23769634
Alignment:
355 atgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattcctt 420  Q
    ||||| |||||||||||||||||||||  ||  ||| |||||||||||||||||| ||||| ||||    
23769699 atgatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgttcactatacctt 23769634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 355 - 420
Target Start/End: Complemental strand, 23819547 - 23819482
Alignment:
355 atgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattcctt 420  Q
    ||||| |||||||||||||||||||||  ||  ||| |||||||||||||||||| ||||| ||||    
23819547 atgatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgttcactatacctt 23819482  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 353 - 407
Target Start/End: Original strand, 3181713 - 3181767
Alignment:
353 tgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattg 407  Q
    ||||||| ||||| ||||||||||||||| |||  |||||||||||| |||||||    
3181713 tgatgatgtttggcttatgaaggaatatggaaatgaagagtcttggattaaattg 3181767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 20292999 - 20293044
Alignment:
361 tttggattatgaaggaatatgcaaagcaagagtcttggactaaatt 406  Q
    ||||||||||||||||||||| ||   |||||||||||||||||||    
20292999 tttggattatgaaggaatatggaattaaagagtcttggactaaatt 20293044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 420
Target Start/End: Original strand, 23732165 - 23732230
Alignment:
355 atgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattcctt 420  Q
    ||||| |||||||||||||||||||||  ||  ||| |||||||| |||| |||| ||||||||||    
23732165 atgatgtttggattatgaaggaatatgggaataaagcgtcttggaataaactgttcactattcctt 23732230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 420
Target Start/End: Complemental strand, 23764313 - 23764248
Alignment:
355 atgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattcctt 420  Q
    ||||| ||||||| |||||||||||||  | | ||| ||||||||||| |||||| ||||||||||    
23764313 atgatgtttggataatgaaggaatatgggatgaaagcgtcttggactacattgttcactattcctt 23764248  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 420
Target Start/End: Complemental strand, 23814146 - 23814081
Alignment:
355 atgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattcctt 420  Q
    ||||| ||||||| |||||||||||||  | |  || |||||||||||||||||| ||||||||||    
23814146 atgatgtttggataatgaaggaatatgggatgacagcgtcttggactaaattgttcactattcctt 23814081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 223 - 360
Target Start/End: Complemental strand, 1078363 - 1078226
Alignment:
223 gctttattgtttcttttgatttggcaaaggagacttttcaaaagatttcacctcctagtattggaggggtagatgtgtgtgacttgtcgtctttgggtgt 322  Q
    |||||||||||||||||||||||| ||| ||  ||| ||||||| |||  ||||||  |  ||||||||||||||||||| |||| |   | ||||||||    
1078363 gctttattgtttcttttgatttgggaaaagaatcttatcaaaaggttttgcctcctgattatggaggggtagatgtgtgtcacttcttagccttgggtgt 1078264  T
323 tttaagggattgcttgtgcgtgacttctggtgatgata 360  Q
     || ||||||||||||||| || ||||| |||||||||    
1078263 gttgagggattgcttgtgcctggcttctcgtgatgata 1078226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 356 - 423
Target Start/End: Complemental strand, 51381507 - 51381440
Alignment:
356 tgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattccttaca 423  Q
    |||||||||||||||||| ||||||| |||  |||||||||||||||||||||| | |||||||||||    
51381507 tgatatttggattatgaaagaatatggaaatgaagagtcttggactaaattgttcagtattccttaca 51381440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 409
Target Start/End: Complemental strand, 25609416 - 25609376
Alignment:
369 atgaaggaatatgcaaagcaagagtcttggactaaattgtt 409  Q
    ||||||||||||| ||  |||||||||||||||||||||||    
25609416 atgaaggaatatgaaattcaagagtcttggactaaattgtt 25609376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 315 - 409
Target Start/End: Complemental strand, 20019865 - 20019771
Alignment:
315 ttgggtgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgtt 409  Q
    |||||||| ||||| |||| ||||||| | | ||||||| ||||| ||||| | ||||||||||||| ||  |||||||||||||||||||||||    
20019865 ttgggtgtgttaagagatttcttgtgcataatttctggtaatgatgtttgggtcatgaaggaatatggaattcaagagtcttggactaaattgtt 20019771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 409
Target Start/End: Complemental strand, 20016232 - 20016184
Alignment:
361 tttggattatgaaggaatatgcaaagcaagagtcttggactaaattgtt 409  Q
    ||||||| ||||||||||||| ||  |||||||||||||||||||||||    
20016232 tttggatcatgaaggaatatggaattcaagagtcttggactaaattgtt 20016184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 428
Target Start/End: Complemental strand, 22672188 - 22672107
Alignment:
347 ttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattccttacaagcca 428  Q
    ||||||||| ||  ||||| | ||||||||||||| |||  | || ||||||||||||||||| |||||| |||||| ||||    
22672188 ttctggtgacgacgtttgggtaatgaaggaatatggaaataaggaatcttggactaaattgttcactatttcttacatgcca 22672107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 408
Target Start/End: Original strand, 89142 - 89194
Alignment:
356 tgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgt 408  Q
    |||||||||| ||||||||||||||| |||  |||||||||||||||||||||    
89142 tgatatttgggttatgaaggaatatggaaataaagagtcttggactaaattgt 89194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 423
Target Start/End: Original strand, 19727871 - 19727947
Alignment:
347 ttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattccttaca 423  Q
    ||||||||||||| ||||| ||||||  |||||||||||  ||||||| ||||||||| |||| |||||| ||||||    
19727871 ttctggtgatgatgtttgggttatgacagaatatgcaaataaagagtcatggactaaactgttcactatttcttaca 19727947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 409
Target Start/End: Original strand, 36577370 - 36577418
Alignment:
361 tttggattatgaaggaatatgcaaagcaagagtcttggactaaattgtt 409  Q
    ||||||||||||||||||||| |||  |||||||||||| |||||||||    
36577370 tttggattatgaaggaatatggaaataaagagtcttggattaaattgtt 36577418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 106
Target Start/End: Original strand, 11237414 - 11237442
Alignment:
78 catactttgggtaccaatttttggagaag 106  Q
    |||||||||||||||||||||||||||||    
11237414 catactttgggtaccaatttttggagaag 11237442  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 408
Target Start/End: Original strand, 33038159 - 33038211
Alignment:
356 tgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgt 408  Q
    |||| ||||||||||||||||||||| |||  || |||||||||||| |||||    
33038159 tgatgtttggattatgaaggaatatggaaacaaaaagtcttggactagattgt 33038211  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 409
Target Start/End: Original strand, 19119075 - 19119115
Alignment:
369 atgaaggaatatgcaaagcaagagtcttggactaaattgtt 409  Q
    ||||||||||||| |||  ||||||||||||||||||||||    
19119075 atgaaggaatatggaaatgaagagtcttggactaaattgtt 19119115  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 409
Target Start/End: Original strand, 19126369 - 19126409
Alignment:
369 atgaaggaatatgcaaagcaagagtcttggactaaattgtt 409  Q
    ||||||||||||| |||  ||||||||||||||||||||||    
19126369 atgaaggaatatggaaatgaagagtcttggactaaattgtt 19126409  T

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