View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20573_low_68 (Length: 227)
Name: NF20573_low_68
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_low_68 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 30447946 - 30448165
Alignment:
| Q |
7 |
tctccaggagcatggactcattgtcaactacaaagtatttgagatgaagggaaaaagcaggctctggttcagttcgagtctgaggaggaggcaactgaag |
106 |
Q |
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| T |
30447946 |
tctccaggagcatggactcattctcaactacaaagtatttgagatgaagggaaaaagtaggctctggttcagttcgagtctgaggaggaggcaactgaag |
30448045 |
T |
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| Q |
107 |
ccctagtttgcagccatgcaaattcactatctggcttcgtgatccgcatctccttttattatttttgaatgcttcttcttctgcaacatagatacaaaaa |
206 |
Q |
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| T |
30448046 |
ccctagtttgcaggcatgcaaattcactatctggcttcatgatccgcatctccttttattacttttgaatgcttcttcttctgcaacatggatacaaaaa |
30448145 |
T |
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| Q |
207 |
tattaatcattaaataataa |
226 |
Q |
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|||||||||||||||||||| |
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| T |
30448146 |
tattaatcattaaataataa |
30448165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 30415836 - 30415881
Alignment:
| Q |
178 |
cttcttcttctgcaacatagatacaaaaatattaatcattaaataa |
223 |
Q |
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| T |
30415836 |
cttctttttctgcatcatggatacaaaaatattaatcattaaataa |
30415881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 30431527 - 30431569
Alignment:
| Q |
181 |
cttcttctgcaacatagatacaaaaatattaatcattaaataa |
223 |
Q |
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| T |
30431527 |
cttcttctgcaacatggatatgaaaatattaatcattaaataa |
30431569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 30429987 - 30430032
Alignment:
| Q |
178 |
cttcttcttctgcaacatagatacaaaaatattaatcattaaataa |
223 |
Q |
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| T |
30429987 |
cttcttcttctgcaacatgcataaaacaatattaatcattaaataa |
30430032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 30430995 - 30431036
Alignment:
| Q |
182 |
ttcttctgcaacatagatacaaaaatattaatcattaaataa |
223 |
Q |
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|||||| ||| ||| ||||||||||||||||||||||||||| |
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| T |
30430995 |
ttcttcagcatcatggatacaaaaatattaatcattaaataa |
30431036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 13322945 - 13323098
Alignment:
| Q |
11 |
caggagcatggactcattgtcaactacaaagtatttgagatgaa-gggaaaaagcaggctctggttcagttcgagtctgaggaggaggcaactgaagccc |
109 |
Q |
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|||||||||||| |||||||||||| |||||| ||||||||||| ||||||||||||||||| |||||||| ||| | || ||||||||||||||||||| |
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| T |
13322945 |
caggagcatggaatcattgtcaactgcaaagtctttgagatgaatgggaaaaagcaggctctcgttcagtttgagaccgaagaggaggcaactgaagccc |
13323044 |
T |
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| Q |
110 |
tagtttgcagccatgcaaattcactatctggcttcgtgatccgcatctcctttt |
163 |
Q |
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| T |
13323045 |
ttgtttgcaagcatgcaagttcactttccggcttcgtggtccgtatctcctttt |
13323098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 12 - 163
Target Start/End: Complemental strand, 13366968 - 13366816
Alignment:
| Q |
12 |
aggagcatggactcattgtcaactacaaagtatttgagatgaa-gggaaaaagcaggctctggttcagttcgagtctgaggaggaggcaactgaagccct |
110 |
Q |
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||||||||||| |||| ||||||| |||||| || |||| ||| ||||||| ||| || || ||||| || |||||||| |||||||||||||| ||||| |
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| T |
13366968 |
aggagcatggagtcatcgtcaactgcaaagtcttcgagacgaatgggaaaaggcaagcgcttgttcaatttgagtctgaagaggaggcaactgaggccct |
13366869 |
T |
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| Q |
111 |
agtttgcagccatgcaaattcactatctggcttcgtgatccgcatctcctttt |
163 |
Q |
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| T |
13366868 |
agtttgcaaacatgcaagtttaatttctggcttggtgatccgcatatcctttt |
13366816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 44359085 - 44358986
Alignment:
| Q |
12 |
aggagcatggactcattgtcaactacaaagtatttgagatgaa-gggaaaaagcaggctctggttcagttcgagtctgaggaggaggcaactgaagccct |
110 |
Q |
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||||||||||| ||||||||| |||||||||||||||||| ||||| || || | |||||||||||| ||| ||||||| |||| ||||||||||| |
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| T |
44359085 |
aggagcatggaaccattgtcaatagcaaagtatttgagatgaatgggaagaaacaaggtctggttcagtttgagactgaggatcaggctactgaagccct |
44358986 |
T |
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