View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20573_low_69 (Length: 225)

Name: NF20573_low_69
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20573_low_69
NF20573_low_69
[»] chr5 (9 HSPs)
chr5 (98-218)||(14356718-14356838)
chr5 (102-187)||(30915763-30915848)
chr5 (102-170)||(33362349-33362416)
chr5 (102-146)||(30915906-30915950)
chr5 (103-169)||(14357647-14357713)
chr5 (102-144)||(9038709-9038751)
chr5 (104-146)||(25001901-25001942)
chr5 (103-145)||(26403964-26404006)
chr5 (113-151)||(39349865-39349903)
[»] chr7 (14 HSPs)
chr7 (98-172)||(29658376-29658450)
chr7 (103-187)||(22794086-22794170)
chr7 (103-186)||(7147628-7147710)
chr7 (103-166)||(40918099-40918162)
chr7 (102-170)||(29409004-29409072)
chr7 (103-157)||(8540854-8540908)
chr7 (102-187)||(29657276-29657361)
chr7 (102-146)||(4973839-4973883)
chr7 (102-145)||(19217892-19217934)
chr7 (103-142)||(32893716-32893755)
chr7 (102-133)||(19218782-19218813)
chr7 (103-145)||(22061551-22061593)
chr7 (103-145)||(48672158-48672200)
chr7 (102-170)||(43006676-43006744)
[»] chr4 (12 HSPs)
chr4 (104-177)||(5548411-5548484)
chr4 (102-215)||(37642256-37642369)
chr4 (102-170)||(5547179-5547247)
chr4 (103-146)||(54373795-54373838)
chr4 (103-146)||(49923553-49923596)
chr4 (102-144)||(17522353-17522394)
chr4 (102-146)||(5433183-5433227)
chr4 (103-146)||(23757732-23757775)
chr4 (102-141)||(48481202-48481241)
chr4 (102-145)||(55953105-55953148)
chr4 (103-153)||(44128083-44128133)
chr4 (102-146)||(49922792-49922836)
[»] scaffold0171 (1 HSPs)
scaffold0171 (102-186)||(29000-29084)
[»] scaffold2117 (1 HSPs)
scaffold2117 (102-186)||(270-354)
[»] chr8 (6 HSPs)
chr8 (102-170)||(11080794-11080862)
chr8 (103-146)||(42307762-42307805)
chr8 (102-153)||(12819878-12819929)
chr8 (102-145)||(43276066-43276109)
chr8 (103-145)||(27750382-27750424)
chr8 (102-151)||(41637213-41637261)
[»] chr3 (7 HSPs)
chr3 (102-186)||(36627196-36627279)
chr3 (102-151)||(54353318-54353366)
chr3 (103-158)||(42633010-42633065)
chr3 (103-145)||(41387189-41387231)
chr3 (103-144)||(14206572-14206613)
chr3 (103-144)||(14214320-14214361)
chr3 (111-152)||(47916438-47916479)
[»] chr6 (5 HSPs)
chr6 (103-170)||(682542-682609)
chr6 (103-146)||(18498260-18498303)
chr6 (102-153)||(18499679-18499730)
chr6 (103-170)||(21455422-21455489)
chr6 (102-166)||(1756541-1756605)
[»] chr1 (9 HSPs)
chr1 (98-167)||(40779411-40779480)
chr1 (102-193)||(49619564-49619655)
chr1 (98-134)||(49618712-49618748)
chr1 (103-158)||(25786908-25786963)
chr1 (103-146)||(40778658-40778701)
chr1 (102-145)||(51693412-51693454)
chr1 (102-151)||(40187897-40187945)
chr1 (111-151)||(50483889-50483929)
chr1 (103-144)||(52439074-52439115)
[»] scaffold0041 (3 HSPs)
scaffold0041 (103-166)||(54933-54996)
scaffold0041 (103-145)||(913-955)
scaffold0041 (103-153)||(841-891)
[»] scaffold0034 (1 HSPs)
scaffold0034 (102-187)||(98325-98410)
[»] scaffold0065 (1 HSPs)
scaffold0065 (102-144)||(35638-35680)
[»] chr2 (1 HSPs)
chr2 (102-187)||(12365780-12365865)
[»] scaffold0007 (1 HSPs)
scaffold0007 (103-135)||(145654-145686)


Alignment Details
Target: chr5 (Bit Score: 97; Significance: 8e-48; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 98 - 218
Target Start/End: Original strand, 14356718 - 14356838
Alignment:
98 cttccaaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaaactataatcaacaccacaacaatcttccaaaatcatatcaacaa 197  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
14356718 cttccaaaaattcatcattttaacttcaacaaaaaccacataatcaaactcttaaaactataatcaacaccacaacaatcatccaaaatcagatcaacaa 14356817  T
198 cacctgctcactccaaaaaga 218  Q
    ||||   ||||||||||||||    
14356818 cacccattcactccaaaaaga 14356838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 30915763 - 30915848
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaaactataatcaacaccacaacaatcttccaaaatc 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||  |||||| |||||||| || ||| | |||||||    
30915763 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaacctttaaatttataattaacaccaccaccatcattcaaaatc 30915848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 33362416 - 33362349
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaaactataatcaacaccac 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| ||||||||    
33362416 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaac-ctttaaattataattaacaccac 33362349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 30915950 - 30915906
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaac 146  Q
    ||||||||||||||||||||||||||||||||||||  |||||||    
30915950 caaaaattcatcatttcaacttcaacaaaaaccacaccatcaaac 30915906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 14357713 - 14357647
Alignment:
103 aaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaaactataatcaacacca 169  Q
    |||||||||||||||||||||||||||||  |||| ||||||||  |||||  |||||| |||||||    
14357713 aaaaattcatcatttcaacttcaacaaaattcacaaaatcaaacatttaaatttataattaacacca 14357647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 9038709 - 9038751
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaaccacataatcaa 144  Q
    ||||||||||||||||||| || ||||||||| ||||||||||    
9038709 caaaaattcatcatttcaaatttaacaaaaacaacataatcaa 9038751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 25001901 - 25001942
Alignment:
104 aaaattcatcatttcaacttcaacaaaaaccacataatcaaac 146  Q
    |||||||||||||||| |||||||||||| |||||||||||||    
25001901 aaaattcatcatttcatcttcaacaaaaa-cacataatcaaac 25001942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 145
Target Start/End: Complemental strand, 26404006 - 26403964
Alignment:
103 aaaaattcatcatttcaacttcaacaaaaaccacataatcaaa 145  Q
    ||||||||||||||||||||||| |||||| || |||||||||    
26404006 aaaaattcatcatttcaacttcatcaaaaatcatataatcaaa 26403964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 151
Target Start/End: Original strand, 39349865 - 39349903
Alignment:
113 catttcaacttcaacaaaaaccacataatcaaactctta 151  Q
    ||||||||||||||||||||||||||||| |||| ||||    
39349865 catttcaacttcaacaaaaaccacataattaaacactta 39349903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 29658450 - 29658376
Alignment:
98 cttccaaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaaactataatcaacaccacaa 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
29658450 cttccaaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaaactataattaacatcacaa 29658376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 22794170 - 22794086
Alignment:
103 aaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaaactataatcaacaccacaacaatcttccaaaatc 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||  |||||| |||||||| |||||| | |||||||    
22794170 aaaaattcatcatttcaacttcaacaaaaaccacataatcaaacctttaaatttataattaacaccaccacaatcattcaaaatc 22794086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 103 - 186
Target Start/End: Complemental strand, 7147710 - 7147628
Alignment:
103 aaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaaactataatcaacaccacaacaatcttccaaaat 186  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||| ||||| ||| ||| ||||||||||| ||| ||||||||    
7147710 aaaaatttatcatttcaatttcaacaaaaatcacataatcaaact-ttaaatctacaattaacaccacaaccatcatccaaaat 7147628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 40918162 - 40918099
Alignment:
103 aaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaaactataatcaaca 166  Q
    |||||||||| |||||||||||||||||||||||||||||||||  ||||| ||||||| ||||    
40918162 aaaaattcatgatttcaacttcaacaaaaaccacataatcaaacctttaaatctataattaaca 40918099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 29409072 - 29409004
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaaactataatcaacaccac 170  Q
    |||||||||||||||| ||||||||||||||||| | |||||||| |||||| | ||||| ||||||||    
29409072 caaaaattcatcattttaacttcaacaaaaaccataaaatcaaacccttaaatccataattaacaccac 29409004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 8540854 - 8540908
Alignment:
103 aaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaaacta 157  Q
    |||||||||||| || ||||| ||||||||||| |||||||||||||||||||||    
8540854 aaaaattcatcaatttaactttaacaaaaaccatataatcaaactcttaaaacta 8540908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 29657276 - 29657361
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaaactataatcaacaccacaacaatcttccaaaatc 187  Q
    |||||||||||||||||||||||||||||| ||| | ||||||||  |||||  |||||| |||||||| || ||| | |||||||    
29657276 caaaaattcatcatttcaacttcaacaaaatccaaaaaatcaaacatttaaatttataattaacaccaccaccatcattcaaaatc 29657361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 4973883 - 4973839
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaac 146  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||    
4973883 caaaaattcatcatttcaacttgaacaaaaaccacaaaatcaaac 4973839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 145
Target Start/End: Original strand, 19217892 - 19217934
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaa 145  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
19217892 caaaaattcatcatttcaacttcaacaaaaa-cacataatcaaa 19217934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 142
Target Start/End: Original strand, 32893716 - 32893755
Alignment:
103 aaaaattcatcatttcaacttcaacaaaaaccacataatc 142  Q
    ||||||||||||||||||||||||||||||||||| ||||    
32893716 aaaaattcatcatttcaacttcaacaaaaaccacaaaatc 32893755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 133
Target Start/End: Complemental strand, 19218813 - 19218782
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaac 133  Q
    ||||||||||||||||||||||||||||||||    
19218813 caaaaattcatcatttcaacttcaacaaaaac 19218782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 145
Target Start/End: Complemental strand, 22061593 - 22061551
Alignment:
103 aaaaattcatcatttcaacttcaacaaaaaccacataatcaaa 145  Q
    ||||||||||| ||||||||||| ||||||||| |||||||||    
22061593 aaaaattcatcttttcaacttcatcaaaaaccatataatcaaa 22061551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 145
Target Start/End: Complemental strand, 48672200 - 48672158
Alignment:
103 aaaaattcatcatttcaacttcaacaaaaaccacataatcaaa 145  Q
    ||||||||||||||| ||||||| ||||||||| |||||||||    
48672200 aaaaattcatcattttaacttcatcaaaaaccatataatcaaa 48672158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 43006676 - 43006744
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaaactataatcaacaccac 170  Q
    ||||||||||||||||||||||||  ||||| || |||||||||  |||||| ||  ||| ||||||||    
43006676 caaaaattcatcatttcaacttcataaaaaatcatataatcaaatccttaaatctggaataaacaccac 43006744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 5548484 - 5548411
Alignment:
104 aaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaaactataatcaacaccacaacaatc 177  Q
    |||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||    
5548484 aaaattcatcattttaacttcaacaaaaatcacataatcaaactctaaaaactataattaacaccacaacaatc 5548411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 215
Target Start/End: Complemental strand, 37642369 - 37642256
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaaactataatcaacaccacaacaatcttccaaaatcatatcaacaacacc 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||  ||||||||||||||| || ||| | ||||||   |||| |||||||    
37642369 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaacctttaaatttataatcaacaccaccaccatcattcaaaattggatcatcaacacc 37642270  T
202 tgctcactccaaaa 215  Q
       |||||||||||    
37642269 cattcactccaaaa 37642256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 5547179 - 5547247
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaaactataatcaacaccac 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||  |||||| ||||||||    
5547179 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaacctttaaatttataattaacaccac 5547247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 103 - 146
Target Start/End: Complemental strand, 54373838 - 54373795
Alignment:
103 aaaaattcatcatttcaacttcaacaaaaaccacataatcaaac 146  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
54373838 aaaaattcatcatttcaacttcaacaaaaaccacaaaatcaaac 54373795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 146
Target Start/End: Complemental strand, 49923596 - 49923553
Alignment:
103 aaaaattcatcatttcaacttcaacaaaaaccacataatcaaac 146  Q
    |||||||||||||||| |||||||||||||||||| ||||||||    
49923596 aaaaattcatcatttctacttcaacaaaaaccacaaaatcaaac 49923553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 144
Target Start/End: Complemental strand, 17522394 - 17522353
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaaccacataatcaa 144  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
17522394 caaaaattcatcatttcaacttcaacaaaaa-cacataatcaa 17522353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 5433227 - 5433183
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaac 146  Q
    |||||||||||||||||||||| | ||||||| ||||||||||||    
5433227 caaaaattcatcatttcaacttaatcaaaaacaacataatcaaac 5433183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 146
Target Start/End: Complemental strand, 23757775 - 23757732
Alignment:
103 aaaaattcatcatttcaacttcaacaaaaaccacataatcaaac 146  Q
    ||||||||||||||||||||| | ||||||| ||||||||||||    
23757775 aaaaattcatcatttcaacttaatcaaaaacaacataatcaaac 23757732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 141
Target Start/End: Original strand, 48481202 - 48481241
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaaccacataat 141  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
48481202 caaaaattcattatttcaacttcaacaaaaaccacgtaat 48481241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 145
Target Start/End: Original strand, 55953105 - 55953148
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaa 145  Q
    |||||||||||||||||||||| | ||||||||| |||||||||    
55953105 caaaaattcatcatttcaacttaatcaaaaaccatataatcaaa 55953148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 44128133 - 44128083
Alignment:
103 aaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaa 153  Q
    |||||||||||||||||| |||| ||||||| | ||||||||| |||||||    
44128133 aaaaattcatcatttcaatttcatcaaaaactatataatcaaattcttaaa 44128083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 49922792 - 49922836
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaac 146  Q
    |||||||||||||||| || |||||||||||| ||| ||||||||    
49922792 caaaaattcatcattttaatttcaacaaaaactacaaaatcaaac 49922836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 29084 - 29000
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaaactataatcaacaccacaacaatcttccaaaat 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||| ||| ||| ||||||||||| ||| ||||||||    
29084 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaacctttaaatctacaattaacaccacaaccatcatccaaaat 29000  T

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Target: scaffold2117 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold2117
Description:

Target: scaffold2117; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 354 - 270
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaaactataatcaacaccacaacaatcttccaaaat 186  Q
    |||||||||||||||| ||||| |||||||| || |||||||||| |||||| ||||||| ||||||||||| ||| ||||||||    
354 caaaaattcatcatttaaactttaacaaaaaacaaataatcaaacccttaaatctataattaacaccacaaccatcatccaaaat 270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 11080862 - 11080794
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaaactataatcaacaccac 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||  |||||| ||||||||    
11080862 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaacctttaaatttataattaacaccac 11080794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 42307762 - 42307805
Alignment:
103 aaaaattcatcatttcaacttcaacaaaaaccacataatcaaac 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
42307762 aaaaattcatcatttcaacttcaacaaaaaccacataatcaaac 42307805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 12819929 - 12819878
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaa 153  Q
    |||||||||||| |||||||||||||||||||||||| || |||| ||||||    
12819929 caaaaattcatcttttcaacttcaacaaaaaccacattattaaacccttaaa 12819878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 145
Target Start/End: Original strand, 43276066 - 43276109
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaa 145  Q
    |||||||||||||||||||||| | ||||||||| |||||||||    
43276066 caaaaattcatcatttcaacttaatcaaaaaccatataatcaaa 43276109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 145
Target Start/End: Complemental strand, 27750424 - 27750382
Alignment:
103 aaaaattcatcatttcaacttcaacaaaaaccacataatcaaa 145  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||    
27750424 aaaaattgatcatttcaacttcatcaaaaaccatataatcaaa 27750382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 41637213 - 41637261
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaactctta 151  Q
    |||||||| ||||||||||||||||||||||||| ||||| |||| ||||    
41637213 caaaaatt-atcatttcaacttcaacaaaaaccatataattaaacactta 41637261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 36627196 - 36627279
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaaactataatcaacaccacaacaatcttccaaaat 186  Q
    |||||||| |||||||||||||||||||||| |||||||||||||| ||||| ||| ||| ||||||||||| ||| ||||||||    
36627196 caaaaatttatcatttcaacttcaacaaaaatcacataatcaaact-ttaaatctacaattaacaccacaaccatcatccaaaat 36627279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 54353318 - 54353366
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaactctta 151  Q
    |||||||| ||||||||||||||||||||||||||||||| |||| ||||    
54353318 caaaaatt-atcatttcaacttcaacaaaaaccacataattaaacactta 54353366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 158
Target Start/End: Original strand, 42633010 - 42633065
Alignment:
103 aaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaaactat 158  Q
    ||||||||||||||||||||||| |||||||||  ||||||||  |||||| ||||    
42633010 aaaaattcatcatttcaacttcatcaaaaaccatgtaatcaaatccttaaacctat 42633065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 145
Target Start/End: Complemental strand, 41387231 - 41387189
Alignment:
103 aaaaattcatcatttcaacttcaacaaaaaccacataatcaaa 145  Q
    ||||||||||||||||||||||| |||||| || |||||||||    
41387231 aaaaattcatcatttcaacttcatcaaaaatcatataatcaaa 41387189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 144
Target Start/End: Complemental strand, 14206613 - 14206572
Alignment:
103 aaaaattcatcatttcaacttcaacaaaaaccacataatcaa 144  Q
    ||||||| |||||||||||||||| ||||| |||||||||||    
14206613 aaaaatttatcatttcaacttcaataaaaatcacataatcaa 14206572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 144
Target Start/End: Complemental strand, 14214361 - 14214320
Alignment:
103 aaaaattcatcatttcaacttcaacaaaaaccacataatcaa 144  Q
    ||||||| |||||||||||||||| ||||| |||||||||||    
14214361 aaaaatttatcatttcaacttcaataaaaatcacataatcaa 14214320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 47916438 - 47916479
Alignment:
111 atcatttcaacttcaacaaaaaccacataatcaaactcttaa 152  Q
    |||||||||||||||||||| || |||||||||||| |||||    
47916438 atcatttcaacttcaacaaatacaacataatcaaacccttaa 47916479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 682542 - 682609
Alignment:
103 aaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaaactataatcaacaccac 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||  |||||| ||||||||    
682542 aaaaattcatcatttcaacttcaacaaaaaccacataatcaaacctttaaatttataattaacaccac 682609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 18498260 - 18498303
Alignment:
103 aaaaattcatcatttcaacttcaacaaaaaccacataatcaaac 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
18498260 aaaaattcatcatttcaacttcaacaaaaaccacataatcaaac 18498303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 18499730 - 18499679
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaa 153  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||| ||||||    
18499730 caaaaatccatcatttcaaattcaacaaaaaccacataatcaaacccttaaa 18499679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 21455422 - 21455489
Alignment:
103 aaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaaactataatcaacaccac 170  Q
    ||||| |||||||| |||||||||||| ||| ||||||||||||||||||| ||| ||| ||||||||    
21455422 aaaaactcatcattccaacttcaacaataactacataatcaaactcttaaatctagaattaacaccac 21455489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 1756541 - 1756605
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaaactataatcaaca 166  Q
    |||||||| ||||||||||||| ||||||||||||||||| |||| ||||||  || ||||||||    
1756541 caaaaatttatcatttcaactttaacaaaaaccacataattaaacccttaaatttagaatcaaca 1756605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 40779480 - 40779411
Alignment:
98 cttccaaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaaactataatcaacac 167  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||  |||||  |||||| |||||    
40779480 cttccaaaaattcatcatttcaacttcaacaaaaaccacaaaatcaaacatttaaatttataattaacac 40779411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 102 - 193
Target Start/End: Complemental strand, 49619655 - 49619564
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaaactataatcaacaccacaacaatcttccaaaatcatatca 193  Q
    |||||||||||||||||||||||||||||||||||| ||||||||  |||||  || ||| |||||||| || ||| | |||||||| ||||    
49619655 caaaaattcatcatttcaacttcaacaaaaaccacaaaatcaaacatttaaatttagaattaacaccaccaccatcattcaaaatcagatca 49619564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 49618712 - 49618748
Alignment:
98 cttccaaaaattcatcatttcaacttcaacaaaaacc 134  Q
    |||||||||||||||||||||||||||||||||||||    
49618712 cttccaaaaattcatcatttcaacttcaacaaaaacc 49618748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 158
Target Start/End: Complemental strand, 25786963 - 25786908
Alignment:
103 aaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaaactat 158  Q
    ||||||||||||||||||||||| |||||||||  ||||||||| |||||| ||||    
25786963 aaaaattcatcatttcaacttcatcaaaaaccatgtaatcaaacccttaaacctat 25786908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 40778658 - 40778701
Alignment:
103 aaaaattcatcatttcaacttcaacaaaaaccacataatcaaac 146  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||    
40778658 aaaaattcatcatttcaacttcagcaaaaaccacaaaatcaaac 40778701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 145
Target Start/End: Original strand, 51693412 - 51693454
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaa 145  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
51693412 caaaaattcatcatttcaacttcaacaaaaa-cacataatcaaa 51693454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 40187897 - 40187945
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaactctta 151  Q
    |||||||| ||||||||||||||||||||||||||||||| |||| ||||    
40187897 caaaaatt-atcatttcaacttcaacaaaaaccacataattaaacactta 40187945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 50483889 - 50483929
Alignment:
111 atcatttcaacttcaacaaaaaccacataatcaaactctta 151  Q
    ||||||||||||||||||||||||||||||| |||| ||||    
50483889 atcatttcaacttcaacaaaaaccacataattaaacactta 50483929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 144
Target Start/End: Complemental strand, 52439115 - 52439074
Alignment:
103 aaaaattcatcatttcaacttcaacaaaaaccacataatcaa 144  Q
    ||||||| |||||||||||||||| ||||| |||||||||||    
52439115 aaaaatttatcatttcaacttcaataaaaatcacataatcaa 52439074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 54933 - 54996
Alignment:
103 aaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaaactataatcaaca 166  Q
    |||||||||| |||||||||||||||||||||||||||||||||  ||||| ||||||| ||||    
54933 aaaaattcatgatttcaacttcaacaaaaaccacataatcaaacctttaaatctataattaaca 54996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 145
Target Start/End: Complemental strand, 955 - 913
Alignment:
103 aaaaattcatcatttcaacttcaacaaaaaccacataatcaaa 145  Q
    ||||||| |||||||||||||||||||||| ||||||||||||    
955 aaaaattaatcatttcaacttcaacaaaaatcacataatcaaa 913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 841 - 891
Alignment:
103 aaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaa 153  Q
    ||||||| ||| ||||||||||||||||||  |||||||||||| ||||||    
841 aaaaattaatcttttcaacttcaacaaaaataacataatcaaacccttaaa 891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 98325 - 98410
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaaactataatcaacaccacaacaatcttccaaaatc 187  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||  |||||  |||||| |||||||| || ||| | |||||||    
98325 caaaaattcatcatttcaacttcaacaaaaaccacaaaattaaacatttaaatttataattaacaccaccaccatcattcaaaatc 98410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 35638 - 35680
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaaccacataatcaa 144  Q
    ||||||| ||||||||||||||||||||||| |||||||||||    
35638 caaaaatccatcatttcaacttcaacaaaaatcacataatcaa 35680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 12365865 - 12365780
Alignment:
102 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaactcttaaaactataatcaacaccacaacaatcttccaaaatc 187  Q
    |||||||| ||||||  ||||||||||||||||| ||||||||||  |||||  |||||| |||||||| || ||| | |||||||    
12365865 caaaaattgatcattaaaacttcaacaaaaaccatataatcaaacctttaaatttataattaacaccaccaccatcattcaaaatc 12365780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 135
Target Start/End: Complemental strand, 145686 - 145654
Alignment:
103 aaaaattcatcatttcaacttcaacaaaaacca 135  Q
    ||||||||||||||||||||||| |||||||||    
145686 aaaaattcatcatttcaacttcatcaaaaacca 145654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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