View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20573_low_7 (Length: 496)
Name: NF20573_low_7
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20573_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 265 - 480
Target Start/End: Original strand, 42864078 - 42864293
Alignment:
| Q |
265 |
acatttgtatggagaaagtttaggctgatatctggtttgcgcattgnnnnnnngttttaactcaaattctaataatcattttttctgtgttattatgcaa |
364 |
Q |
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| T |
42864078 |
acatttctatggagaaagtttaagctgatatctggttcgcgcattgtttttttgttttaactcaaattctaataatcattttttctgtgttattatgcaa |
42864177 |
T |
|
| Q |
365 |
aacagcacatttaagaagaaagctcctaaagcaataaaggagatcaggaagtttgcccaaaaggctatgggaactaatgatgtcagagtagacgttaagt |
464 |
Q |
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| T |
42864178 |
aacagcacatttaagaagaaagctcctaaagcaataaaggagatcaggaagtttgcccaaaaggctatgggaactaatgatgtcagagtggacgttaagt |
42864277 |
T |
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| Q |
465 |
tgaacaaggctatttg |
480 |
Q |
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|||||||||||||||| |
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| T |
42864278 |
tgaacaaggctatttg |
42864293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 36 - 238
Target Start/End: Original strand, 42863646 - 42863841
Alignment:
| Q |
36 |
atattgtaattaacctgtatgaatgttaaatgttaagtgactctgatattaatgctgtcaaccgtgctatttccttgcgatagtttcaatttcacacgat |
135 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42863646 |
atattgtaattaacctgtatgaatg-------ttaagtgactctgatattaatgttgtcaaccgtgctatttccttgcgatagtttcaatttcacacgtt |
42863738 |
T |
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| Q |
136 |
tttacatcaaatagcatattgcatcgcagacagtcgaggttcgctctgctctagctgtccagtgctgccatagatgttatttaacaataccctgtgattt |
235 |
Q |
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| T |
42863739 |
tttacatcaaatagcatatcgcatcgcagacagtcgaggtttgctctgctctagctgtccagtgctgccatagatgttatttaacaatacactgtgattt |
42863838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 363 - 477
Target Start/End: Complemental strand, 34508319 - 34508205
Alignment:
| Q |
363 |
aaaacagcacatttaagaagaaagctcctaaagcaataaaggagatcaggaagtttgcccaaaaggctatgggaactaatgatgtcagagtagacgttaa |
462 |
Q |
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|||||||||| || |||||||| || || ||||| || ||||||||||| |||||||| ||||| || ||||| ||||| ||||| ||||| |||||||| |
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| T |
34508319 |
aaaacagcaccttcaagaagaaggcaccaaaagccatcaaggagatcagaaagtttgctcaaaaagccatgggcactaacgatgttagagttgacgttaa |
34508220 |
T |
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| Q |
463 |
gttgaacaaggctat |
477 |
Q |
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| T |
34508219 |
gttgaacaaggctat |
34508205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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