View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20573_low_72 (Length: 219)

Name: NF20573_low_72
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20573_low_72
NF20573_low_72
[»] chr2 (2 HSPs)
chr2 (94-205)||(44911625-44911736)
chr2 (124-205)||(3769095-3769176)
[»] chr1 (1 HSPs)
chr1 (124-205)||(3928541-3928622)
[»] chr4 (1 HSPs)
chr4 (124-205)||(6353891-6353972)
[»] chr6 (1 HSPs)
chr6 (149-205)||(30372873-30372929)
[»] chr3 (1 HSPs)
chr3 (125-204)||(36501298-36501377)


Alignment Details
Target: chr2 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 94 - 205
Target Start/End: Original strand, 44911625 - 44911736
Alignment:
Q  94 gcctatgctttcaaagcatcatcatgtttatcaaaattatttcacaccatcacagagggtcaggaatttaactaccataaaacctccaatttaccgttca 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44911625 gcctatgctttcaaagcatcatcatgtttatcaaaattatttcacaccatgacagagggtcaggaatttaactaccataaaacatccaatttaccgttca 44911724  T
Q  194 tgccattcatct 205  Q
    ||||||||||||    
T  44911725 tgccattcatct 44911736  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 124 - 205
Target Start/End: Complemental strand, 3769176 - 3769095
Alignment:
Q  124 tcaaaattatttcacaccatcacagagggtcaggaatttaactaccataaaacctccaatttaccgttcatgccattcatct 205  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3769176 tcaaaattatttcacaccatcacagggggtcaggaatttaactaccatagaacctccaatttaccgttcatgccattcatct 3769095  T

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Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 124 - 205
Target Start/End: Original strand, 3928541 - 3928622
Alignment:
Q  124 tcaaaattatttcacaccatcacagagggtcaggaatttaactaccataaaacctccaatttaccgttcatgccattcatct 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||    
T  3928541 tcaaaattatttcacaccatcacagagggtcaggaatttaactaccatagaaccttcaatttaccgttcatgtcattcatct 3928622  T

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Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 124 - 205
Target Start/End: Original strand, 6353891 - 6353972
Alignment:
Q  124 tcaaaattatttcacaccatcacagagggtcaggaatttaactaccataaaacctccaatttaccgttcatgccattcatct 205  Q
    |||||||||||||||||||||| ||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  6353891 tcaaaattatttcacaccatcagagagggtcatgaattaaactaccatagaacctccaatttaccgttcatgccattcatct 6353972  T

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Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 30372929 - 30372873
Alignment:
Q  149 agggtcaggaatttaactaccataaaacctccaatttaccgttcatgccattcatct 205  Q
    |||||||||||||||||||||||| | |||||||||||||||||||| |||||||||    
T  30372929 agggtcaggaatttaactaccatagatcctccaatttaccgttcatgtcattcatct 30372873  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 204
Target Start/End: Complemental strand, 36501377 - 36501298
Alignment:
Q  125 caaaattatttcacaccatcacagagggtcaggaatttaactaccataaaacctccaa-tttaccgttcatgccattcatc 204  Q
    |||||| ||||||||||||| || |||| |||| ||| ||||||| |||||| ||||| |||| | |||||||||||||||    
T  36501377 caaaatcatttcacaccatcgcaaagggccagggattcaactaccctaaaac-tccaactttatccttcatgccattcatc 36501298  T

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