View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20573_low_76 (Length: 209)

Name: NF20573_low_76
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20573_low_76
NF20573_low_76
[»] chr1 (2 HSPs)
chr1 (34-169)||(1619569-1619704)
chr1 (34-169)||(48582970-48583108)
[»] chr2 (1 HSPs)
chr2 (34-103)||(6608805-6608874)
[»] chr7 (2 HSPs)
chr7 (34-103)||(23633716-23633785)
chr7 (46-103)||(39147602-39147659)
[»] chr5 (1 HSPs)
chr5 (34-103)||(6901059-6901127)


Alignment Details
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 34 - 169
Target Start/End: Original strand, 1619569 - 1619704
Alignment:
Q  34 ttggatcgttgagtgaaatgtagctattataaattttatgacttggatatttgagtttaatgatgattaannnnnnngattttcaattagaagccattga 133  Q
    ||||||| |||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||       | |||||||||||||| ||||||    
T  1619569 ttggatctttggatgaaatgtagctattataagttttatgacttggatatttgagtttaatgatgattaatttttttggttttcaattagaagtcattga 1619668  T
Q  134 ttggtaagtgactaagtgttattgtgatagtgaggt 169  Q
    ||||||||||||||||||||||||||||||||||||    
T  1619669 ttggtaagtgactaagtgttattgtgatagtgaggt 1619704  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 34 - 169
Target Start/End: Original strand, 48582970 - 48583108
Alignment:
Q  34 ttggatcgttgagtgaaatgtagctattataaattttatgacttggatatttgagtttaatga---tgattaannnnnnngattttcaattagaagccat 130  Q
    ||||||| |||  ||||||||||||||||||| ||||||||||||||||||||||||||||||   |||||||       | ||||||||||||||||||    
T  48582970 ttggatctttggatgaaatgtagctattataagttttatgacttggatatttgagtttaatgaatatgattaatttttttggttttcaattagaagccat 48583069  T
Q  131 tgattggtaagtgactaagtgttattgtgatagtgaggt 169  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  48583070 tgattggtaagtgactaagtgttattgtgatagtaaggt 48583108  T

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Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 6608874 - 6608805
Alignment:
Q  34 ttggatcgttgagtgaaatgtagctattataaattttatgacttggatatttgagtttaatgatgattaa 103  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6608874 ttggatctttgagtgaaatgtagctattataagttttatgacttggatatttgagtttaatgatgattaa 6608805  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 23633716 - 23633785
Alignment:
Q  34 ttggatcgttgagtgaaatgtagctattataaattttatgacttggatatttgagtttaatgatgattaa 103  Q
    ||||||| ||||||||||||||| | |||||| |||||||||||| |||||||||||| |||||||||||    
T  23633716 ttggatctttgagtgaaatgtagttgttataagttttatgacttgaatatttgagtttgatgatgattaa 23633785  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 39147602 - 39147659
Alignment:
Q  46 gtgaaatgtagctattataaattttatgacttggatatttgagtttaatgatgattaa 103  Q
    ||||||||||| | |||||| |||||||||||| |||||||||||| |||||||||||    
T  39147602 gtgaaatgtagttgttataagttttatgacttgaatatttgagtttgatgatgattaa 39147659  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 6901127 - 6901059
Alignment:
Q  34 ttggatcgttgagtgaaatgtagctattataaattttatgacttggatatttgagtttaatgatgattaa 103  Q
    ||||||| ||||||||||| ||| | |||||| |||||||||||| |||||||||||| |||||||||||    
T  6901127 ttggatctttgagtgaaat-tagttgttataagttttatgacttgaatatttgagtttgatgatgattaa 6901059  T

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