View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20573_low_9 (Length: 469)

Name: NF20573_low_9
Description: NF20573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20573_low_9
NF20573_low_9
[»] chr8 (1 HSPs)
chr8 (1-460)||(41966030-41966484)
[»] chr2 (40 HSPs)
chr2 (60-380)||(10336272-10336577)
chr2 (172-456)||(8572813-8573101)
chr2 (168-380)||(9357710-9357922)
chr2 (165-306)||(10372388-10372529)
chr2 (169-237)||(12005658-12005726)
chr2 (61-123)||(9292357-9292419)
chr2 (61-123)||(9357612-9357674)
chr2 (168-241)||(9275051-9275124)
chr2 (165-306)||(10348309-10348450)
chr2 (60-123)||(9321404-9321467)
chr2 (60-123)||(9060774-9060837)
chr2 (168-238)||(9283720-9283790)
chr2 (61-119)||(9283833-9283891)
chr2 (60-119)||(8573142-8573201)
chr2 (61-123)||(9316457-9316519)
chr2 (188-314)||(9316578-9316704)
chr2 (61-123)||(9329028-9329090)
chr2 (175-237)||(12018422-12018484)
chr2 (168-237)||(10353651-10353720)
chr2 (169-225)||(14550902-14550958)
chr2 (175-238)||(8579032-8579095)
chr2 (414-460)||(10372676-10372723)
chr2 (169-228)||(12012095-12012154)
chr2 (192-235)||(16269456-16269499)
chr2 (168-306)||(9292458-9292596)
chr2 (17-119)||(11987124-11987226)
chr2 (411-455)||(9292719-9292764)
chr2 (414-460)||(9316816-9316866)
chr2 (188-237)||(9329149-9329198)
chr2 (265-322)||(17565557-17565614)
chr2 (198-306)||(7115114-7115222)
chr2 (180-228)||(9365188-9365236)
chr2 (63-123)||(10372301-10372361)
chr2 (169-237)||(11987021-11987089)
chr2 (60-119)||(7115282-7115341)
chr2 (68-123)||(10348227-10348282)
chr2 (64-123)||(10353553-10353612)
chr2 (17-132)||(12018506-12018621)
chr2 (411-460)||(14551111-14551160)
chr2 (60-120)||(9274940-9275000)
[»] scaffold0667 (1 HSPs)
scaffold0667 (60-460)||(4911-5300)
[»] chr3 (2 HSPs)
chr3 (179-306)||(37463039-37463166)
chr3 (61-123)||(37462927-37462989)
[»] chr1 (12 HSPs)
chr1 (17-124)||(29442965-29443072)
chr1 (3-120)||(29452955-29453072)
chr1 (174-238)||(29423801-29423865)
chr1 (337-460)||(29423934-29424055)
chr1 (62-124)||(29467428-29467489)
chr1 (355-460)||(29442667-29442770)
chr1 (169-228)||(29442867-29442926)
chr1 (361-460)||(29452659-29452756)
chr1 (169-228)||(29452859-29452918)
chr1 (177-228)||(29467333-29467384)
chr1 (66-124)||(29423702-29423760)
chr1 (169-218)||(29463510-29463559)
[»] chr4 (3 HSPs)
chr4 (63-123)||(26575304-26575364)
chr4 (407-460)||(26575666-26575720)
chr4 (176-237)||(26575411-26575472)


Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 41966484 - 41966030
Alignment:
Q  1 gtttttagagctaaatagtctgacatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtaatcgctggttaatgga 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41966484 gtttttagagctaaatagcctgacatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtgatcgctggttaatgga 41966385  T
Q  101 tcaaaaccgaatccgtgaacgcaataggcaaagttgatgtcgtcaggttcagaacgacggggaggaataggaataggaatagggagaaaagggataatcc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||    
T  41966384 tcaaaaccgaatccgtgaacgcaataggcaaagttgatgtcgtcaggttcagaacgacggggaggaataggaatagg------gagaaaagggataatcc 41966291  T
Q  201 gatgtttacagatgttagggttccagaatgtgatttcatttttgtcgtaagggttagagaaatcgatttcgccattggagatgtagaggaggccgttaca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41966290 gatgtttacagatgttagggttccagaatgtgatttcatttttgtcgtaagggttagagaaatcgatttcgccattggagatgcagaggaggccgttaca 41966191  T
Q  301 tgaacccagaagagtgatgttggtgctgtgacgcaagaaaggatgattgagtggaacggcggtggttaggttagagaaatcctcatcgaactggtagaga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41966190 tgaacccagaagagtgatgttggtgctgtgacgcaagaaaggatggttgagtggaacggcggtggttaggttagagaaatcctcatcgaactggtagaga 41966091  T
Q  401 tcagtgttgagtcgaaggattaaggatcgattgagggatttt-tgaggtgaaggttgatga 460  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41966090 tcagtgttgagtcgaaggattaaggatcgattgagggattttctgaggtgaaggttgatga 41966030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 60 - 380
Target Start/End: Original strand, 10336272 - 10336577
Alignment:
Q  60 accaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgcaataggcaaagttgatgtcgtcaggttcagaacgacg 159  Q
    |||||||||||||||||||||||||||||  || ||||| ||||||||||||||||||||||||  | ||      ||||| ||||| || |||||||      
T  10336272 accaagagattctgaggagtttgtaatcggcggataatgaatcaaaaccgaatccgtgaacgcataaagc------gatgttgtcagattgagaacga-- 10336363  T
Q  160 gggaggaataggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttcatttttgtcgtaagggttagag 259  Q
      ||||     ||||||||| ||||||| ||||||||||||||||||||| |||| |||| || ||||||| |||||||||   |  ||||||||||| |    
T  10336364 --gagg-----gaataggaagagggagataagggataatccgatgtttacggatggtaggattacagaatgcgatttcattggcggagtaagggttagtg 10336456  T
Q  260 aaatcgatttcgccattggagatgtagaggaggccgttacatgaacccagaagagtgatgttggtgctgtgacgcaagaaaggatgattgagtggaacgg 359  Q
    ||| ||||||||||||||||||||  ||||||||| || |||||||| ||||||| ||||||| |||||||  | | ||||||||| ||||||||||| |    
T  10336457 aaagcgatttcgccattggagatggcgaggaggccattgcatgaaccaagaagagcgatgttgttgctgtggtggatgaaaggatggttgagtggaacag 10336556  T
Q  360 cggtggttaggttagagaaat 380  Q
    ||||||||||||||| |||||    
T  10336557 cggtggttaggttagggaaat 10336577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 172 - 456
Target Start/End: Complemental strand, 8573101 - 8572813
Alignment:
Q  172 aataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttcatttttgtcgtaagggttagagaaatcgatttcg 271  Q
    |||||||| ||||||||||||||||||  ||||||||| | ||||||||||||||| || |||||  ||   ||| | ||| | ||  ||| |||||       
T  8573101 aataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgcgatttggttggcgtcattaggttgagtcaaagcgattaaa 8573002  T
Q  272 ccattggagatgtagaggaggccgttacatgaacccagaagagtgatgttggtgctgtgacgcaagaaaggatgattgagtggaa---cggcggtggtta 368  Q
    ||||| || |||  ||||||||||||||||||||| | |||||| || |||||||||| ||   |||||||||| ||||||||||   ||||||||||||    
T  8573001 ccattagaaatggcgaggaggccgttacatgaaccgataagagtaattttggtgctgttaccggagaaaggatggttgagtggaaactcggcggtggtta 8572902  T
Q  369 ggttagagaaatcctcatcgaactggtagagatcagtgttgagtcgaaggattaaggatcgattgaggg-atttttgaggtgaaggttg 456  Q
    | | ||||||||| |||||||  ||||||| |||   |||| |||||| ||||||||| |||||||||| |||||||||||||||||||    
T  8572901 gatcagagaaatcatcatcgatttggtagatatcgtagttgcgtcgaatgattaaggaacgattgagggaatttttgaggtgaaggttg 8572813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 168 - 380
Target Start/End: Original strand, 9357710 - 9357922
Alignment:
Q  168 taggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttcatttttgtcgtaagggttagagaaatcgat 267  Q
    |||| ||||||| |||||| |||||||||||  ||||||||| ||||||| ||||||||| || |||||| ||   | ||| ||| |    |||| ||||    
T  9357710 tagggataggaagagggaggaaagggataatgtgatgtttacggatgttatggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgat 9357809  T
Q  268 ttcgccattggagatgtagaggaggccgttacatgaacccagaagagtgatgttggtgctgtgacgcaagaaaggatgattgagtggaacggcggtggtt 367  Q
    ||||||||||||||||  ||||||||||||||||||||| | |||||  ||||||||||||| ||||  |||||| || ||||||||||||||||||||     
T  9357810 ttcgccattggagatggcgaggaggccgttacatgaaccgataagagaaatgttggtgctgttacgcgtgaaagggtggttgagtggaacggcggtggtg 9357909  T
Q  368 aggttagagaaat 380  Q
    | ||| |||||||    
T  9357910 aagtttgagaaat 9357922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 165 - 306
Target Start/End: Original strand, 10372388 - 10372529
Alignment:
Q  165 gaataggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttcatttttgtcgtaagggttagagaaatc 264  Q
    ||||||||||||||| ||||||||||||||||| || |||||||| | ||||||||||||||||||||||||||||   |||  ||||||||  |||| |    
T  10372388 gaataggaataggaagagggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttcattggggtcacaagggttaatgaaagc 10372487  T
Q  265 gatttcgccattggagatgtagaggaggccgttacatgaacc 306  Q
    || || ||| ||| |||||  |||||||||||||||||||||    
T  10372488 gaatttgccgttgcagatggcgaggaggccgttacatgaacc 10372529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 12005726 - 12005658
Alignment:
Q  169 aggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttc 237  Q
    |||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||| ||||||||    
T  12005726 aggaataggaatagggagattagggataatccgatgtttacggatgttagggttccagaaagtgatttc 12005658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 9292357 - 9292419
Alignment:
Q  61 ccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgca 123  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||    
T  9292357 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgca 9292419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 9357612 - 9357674
Alignment:
Q  61 ccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgca 123  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||    
T  9357612 ccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgca 9357674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 9275051 - 9275124
Alignment:
Q  168 taggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttcattt 241  Q
    |||| ||||||| ||||||||||||||||||||||||||||| | ||||||||||||||| ||| |||||||||    
T  9275051 taggtataggaagagggagaaaagggataatccgatgtttaccggtgttagggttccagattgtaatttcattt 9275124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 165 - 306
Target Start/End: Original strand, 10348309 - 10348450
Alignment:
Q  165 gaataggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttcatttttgtcgtaagggttagagaaatc 264  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||| | ||||||||||||||| ||||||||| ||   || || ||| |  | |||| |    
T  10348309 gaataggaataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttcgttgaggttgttaggatgcgtgaaaac 10348408  T
Q  265 gatttcgccattggagatgtagaggaggccgttacatgaacc 306  Q
    |||| | ||  ||||||||  |||||||||||||||||||||    
T  10348409 gattacccctgtggagatggcgaggaggccgttacatgaacc 10348450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 9321404 - 9321467
Alignment:
Q  60 accaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgca 123  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||| || ||||||||    
T  9321404 accaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaaaccatgaacgca 9321467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 9060837 - 9060774
Alignment:
Q  60 accaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgca 123  Q
    |||||| ||||||||||||||||||||||  ||| ||||||||||||||||| |||||||||||    
T  9060837 accaagtgattctgaggagtttgtaatcggcggtgaatggatcaaaaccgaagccgtgaacgca 9060774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 9283790 - 9283720
Alignment:
Q  168 taggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttca 238  Q
    |||| ||||||| |||||||||||||||||||| |||||||| | |||||| |||||||| ||||||||||    
T  9283790 tagggataggaagagggagaaaagggataatccaatgtttacgggtgttagtgttccagattgtgatttca 9283720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 9283891 - 9283833
Alignment:
Q  61 ccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaa 119  Q
    ||||||||||| ||||||||||||||||| |||||| |||||||||||||| |||||||    
T  9283891 ccaagagattcggaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaa 9283833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 8573201 - 8573142
Alignment:
Q  60 accaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaa 119  Q
    |||||||||||| ||||||||||||||||  ||||||| ||||||||||||| |||||||    
T  8573201 accaagagattcggaggagtttgtaatcggcggttaatagatcaaaaccgaagccgtgaa 8573142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 9316457 - 9316519
Alignment:
Q  61 ccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgca 123  Q
    |||||| |||||||||||||||||||| |  ||| |||||||||||||||| |||||||||||    
T  9316457 ccaagaaattctgaggagtttgtaatcacctgttgatggatcaaaaccgaagccgtgaacgca 9316519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 188 - 314
Target Start/End: Original strand, 9316578 - 9316704
Alignment:
Q  188 aaagggataatccgatgtttacagatgttagggttccagaatgtgatttcatttttgtcgtaagggttagagaaatcgatttcgccattggagatgtaga 287  Q
    ||||||||||| |||||||||| | ||||||||||||||| ||||||||| ||   | ||||||| |    |||| ||||||  |||||||| |||  ||    
T  9316578 aaagggataatacgatgtttacgggtgttagggttccagattgtgatttcgttggcgccgtaaggatgcatgaaagcgatttgaccattggaaatggcga 9316677  T
Q  288 ggaggccgttacatgaacccagaagag 314  Q
    | ||||||||||||||||| |||||||    
T  9316678 gaaggccgttacatgaaccgagaagag 9316704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 9329028 - 9329090
Alignment:
Q  61 ccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgca 123  Q
    ||||| ||||||||||||||||||||| | || ||| |||||||||||||| |||||||||||    
T  9329028 ccaagcgattctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgca 9329090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 12018484 - 12018422
Alignment:
Q  175 aggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttc 237  Q
    |||||||||||||  |||||||||||||||||||| ||||| |||||||||||| | ||||||    
T  12018484 aggaatagggagatgagggataatccgatgtttacggatgtaagggttccagaaagcgatttc 12018422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 10353651 - 10353720
Alignment:
Q  168 taggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttc 237  Q
    |||| ||||||| |||||||||||||||||||||||| |||| | |||| |||||||| | |||||||||    
T  10353651 tagggataggaagagggagaaaagggataatccgatgcttacgggtgttggggttccatattgtgatttc 10353720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 14550902 - 14550958
Alignment:
Q  169 aggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttcca 225  Q
    ||||||| |||||||||||  ||||||||| |||||||||| |||||||||||||||    
T  14550902 aggaataagaatagggagatcagggataatgcgatgtttacggatgttagggttcca 14550958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 8579095 - 8579032
Alignment:
Q  175 aggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttca 238  Q
    |||||| |||||| |||||||||  |||||||||| |||||||||||||||||| | |||||||    
T  8579095 aggaatggggagataagggataactcgatgtttacggatgttagggttccagaaagcgatttca 8579032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 414 - 460
Target Start/End: Original strand, 10372676 - 10372723
Alignment:
Q  414 gaaggattaaggatcgattgaggg-atttttgaggtgaaggttgatga 460  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||    
T  10372676 gaaggattaaggatcgattgagggaattttggaggtgaaggttgatga 10372723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 12012154 - 12012095
Alignment:
Q  169 aggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaa 228  Q
    |||||||| || |||||||  |||||||||| ||||||||| ||||||||||||||||||    
T  12012154 aggaatagaaacagggagattagggataatctgatgtttacggatgttagggttccagaa 12012095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 235
Target Start/End: Original strand, 16269456 - 16269499
Alignment:
Q  192 ggataatccgatgtttacagatgttagggttccagaatgtgatt 235  Q
    ||||||||| |||||||||| |||||||||||||||||||||||    
T  16269456 ggataatccaatgtttacaggtgttagggttccagaatgtgatt 16269499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 306
Target Start/End: Original strand, 9292458 - 9292596
Alignment:
Q  168 taggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttcatttttgtcgtaagggttagagaaatcgat 267  Q
    |||| |||| || ||||||||||||||||||||||||||||    ||||||||||| ||| ||||||||| ||   | ||||||| |  | |||   |||    
T  9292458 tagggatagcaagagggagaaaagggataatccgatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagat 9292557  T
Q  268 ttcgccattggagatgtagaggaggccgttacatgaacc 306  Q
    || || |||||| |||  |||||||||||||||||||||    
T  9292558 ttggctattggaaatggcgaggaggccgttacatgaacc 9292596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 11987226 - 11987124
Alignment:
Q  17 agtctgacatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgt 116  Q
    |||||||||| |||||||||||||  |   ||| |||||| | ||||||||||||||| |||||||||||||   |  || |||||||| ||||||||||    
T  11987226 agtctgacatatgaatcaaaagtacggttgtgtagatcaacaaaccaagagattctgatgagtttgtaatcggatgaaaaaggatcaaagccgaatccgt 11987127  T
Q  117 gaa 119  Q
    |||    
T  11987126 gaa 11987124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 411 - 455
Target Start/End: Original strand, 9292719 - 9292764
Alignment:
Q  411 gtcgaaggattaaggatcgattgaggg-atttttgaggtgaaggtt 455  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||    
T  9292719 gtcgaaggattaaggatcggttgagggaatttttgaggtgaaggtt 9292764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 414 - 460
Target Start/End: Original strand, 9316816 - 9316866
Alignment:
Q  414 gaaggattaaggatcgattgaggg----atttttgaggtgaaggttgatga 460  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||    
T  9316816 gaaggattaaggatcgattgagggaattatttttgaggtgaaggttgatga 9316866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 9329149 - 9329198
Alignment:
Q  188 aaagggataatccgatgtttacagatgttagggttccagaatgtgatttc 237  Q
    ||||||||||| |||||||||| | ||||||||||||||| |||||||||    
T  9329149 aaagggataatacgatgtttacgggtgttagggttccagattgtgatttc 9329198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 322
Target Start/End: Complemental strand, 17565614 - 17565557
Alignment:
Q  265 gatttcgccattggagatgtagaggaggccgttacatgaacccagaagagtgatgttg 322  Q
    ||||| ||| ||||||||  ||||||| ||||||||||||||||||||||| ||||||    
T  17565614 gattttgccgttggagatacagaggagaccgttacatgaacccagaagagtaatgttg 17565557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 306
Target Start/End: Complemental strand, 7115222 - 7115114
Alignment:
Q  198 tccgatgtttacagatgttagggttccagaatgtgatttcatttttgtcgtaagggttagagaaatcgatttcgccattggagatgtagaggaggccgtt 297  Q
    |||||||||||| | |||||| |||||||| |||||||||| ||  ||  | ||| |  |  ||| |||||| |||||||||||||  ||||||||||||    
T  7115222 tccgatgtttacgggtgttagtgttccagattgtgatttcagttgcgtgattaggatacgtaaaagcgatttggccattggagatggcgaggaggccgtt 7115123  T
Q  298 acatgaacc 306  Q
    |||||||||    
T  7115122 acatgaacc 7115114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 9365188 - 9365236
Alignment:
Q  180 tagggagaaaagggataatccgatgtttacagatgttagggttccagaa 228  Q
    |||| ||| ||||||| ||||||||||||| ||||||||||||||||||    
T  9365188 taggaagataagggatgatccgatgtttacggatgttagggttccagaa 9365236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 10372301 - 10372361
Alignment:
Q  63 aagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgca 123  Q
    ||||||||||||||||||||| ||||| || ||| | |||||||||||| || ||||||||    
T  10372301 aagagattctgaggagtttgtgatcgccggataaagaatcaaaaccgaagccatgaacgca 10372361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 11987089 - 11987021
Alignment:
Q  169 aggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttc 237  Q
    ||||| ||| ||| |||||  |||||||||||||||||||| | |||||||||||||||| | ||||||    
T  11987089 aggaaaagggataaggagatgagggataatccgatgtttacgggtgttagggttccagaaagcgatttc 11987021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 7115341 - 7115282
Alignment:
Q  60 accaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaa 119  Q
    |||||||||||||||| |||||||||||    ||||| |||||||||||||| |||||||    
T  7115341 accaagagattctgagaagtttgtaatcatctgttaaaggatcaaaaccgaagccgtgaa 7115282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 10348227 - 10348282
Alignment:
Q  68 attctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgca 123  Q
    |||||||||||||||||||| | || || | ||||||||||||| |||||||||||    
T  10348227 attctgaggagtttgtaatcaccggatatttgatcaaaaccgaagccgtgaacgca 10348282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 10353553 - 10353612
Alignment:
Q  64 agagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgca 123  Q
    |||||||||||||||||||||||||| || ||  | |||||||||||| || ||||||||    
T  10353553 agagattctgaggagtttgtaatcgccggatacagaatcaaaaccgaagccatgaacgca 10353612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 12018621 - 12018506
Alignment:
Q  17 agtctgacatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgt 116  Q
    |||||||||| |||||||||||||  |   ||| |||||| | |||||||||||||||  ||||| |||||   ||  || |||||||||||||| ||||    
T  12018621 agtctgacatatgaatcaaaagtacggttgtgtagatcaacaaaccaagagattctgacaagtttataatcagaggacaaaggatcaaaaccgaagccgt 12018522  T
Q  117 gaacgcaataggcaaa 132  Q
     ||||||| |||||||    
T  12018521 aaacgcaaaaggcaaa 12018506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 460
Target Start/End: Original strand, 14551111 - 14551160
Alignment:
Q  411 gtcgaaggattaaggatcgattgagggatttttgaggtgaaggttgatga 460  Q
    |||||||||||||||| | ||||||||| |||| |||||||| |||||||    
T  14551111 gtcgaaggattaaggaacaattgagggaatttttaggtgaagtttgatga 14551160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 9274940 - 9275000
Alignment:
Q  60 accaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaac 120  Q
    |||| ||||||||||| ||||| ||||||| || ||| ||||||||||| || ||||||||    
T  9274940 accatgagattctgagaagtttataatcgccggataaaggatcaaaaccaaaaccgtgaac 9275000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 60 - 460
Target Start/End: Original strand, 4911 - 5300
Alignment:
Q  60 accaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgcaataggcaaagttgatgtcgtcaggttcagaacgacg 159  Q
    ||||||||| |||||||| ||||||||||| |||||| |||||||||||||| |||||||||||  |||   |||| ||||||   ||   |||||||      
T  4911 accaagagagtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcataaggagcagttcatgtcggatgg---agaacga-- 5005  T
Q  160 gggaggaataggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttcatttttgtcgtaagggttagag 259  Q
     |||| ||||||  |||    ||||||||||||||||||  ||||||||| ||||||||||||||||| ||||||||| ||   | ||| ||| |    |    
T  5006 -ggagtaatagg--tag----agggagaaaagggataatgtgatgtttacggatgttagggttccagattgtgatttcgttggcggcgttaggatgtctg 5098  T
Q  260 aaatcgatttcgccattggagatgtagaggaggccgttacatgaacccagaagagtgatgttggtgctgtgacgcaagaaaggatgattgagtggaacgg 359  Q
    | | |||||||||| ||||| | |  ||||||||||||||||||||| | |||||  ||||||||||||| ||||  |||||| || |||||||||||||    
T  5099 agagcgatttcgccgttggaaacggcgaggaggccgttacatgaaccgataagagcaatgttggtgctgttacgcgtgaaagggtggttgagtggaacgg 5198  T
Q  360 cggtggttaggttagagaaatcctcatcgaactggtagagatcagtgttgagtcgaaggattaaggatcgattgaggg-atttttgaggtgaaggttgat 458  Q
    ||||||| ||||| |||||||| || ||||  ||||||| ||  |   ||||||||||||| ||||||| |||||||| ||||||| |||||||||||||    
T  5199 cggtggtgaggtttgagaaatcatcttcgatttggtagatattggatctgagtcgaaggatgaaggatctattgagggaatttttgcggtgaaggttgat 5298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 179 - 306
Target Start/End: Original strand, 37463039 - 37463166
Alignment:
Q  179 atagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttcatttttgtcgtaagggttagagaaatcgatttcgccattgg 278  Q
    ||||||||||||||||||||| |||||||||   ||||||||||||||| ||||||||| ||   | ||| ||| |  | |||| |||||| ||||||||    
T  37463039 atagggagaaaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcgatttggccattgg 37463138  T
Q  279 agatgtagaggaggccgttacatgaacc 306  Q
    ||||   |||||||||||||||||||||    
T  37463139 agatagcgaggaggccgttacatgaacc 37463166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 37462927 - 37462989
Alignment:
Q  61 ccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgca 123  Q
    ||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||    
T  37462927 ccaagagattctgaggagtttgtaatcgccggttaaagaatcaaaaccgaagccgtgaacgca 37462989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 29443072 - 29442965
Alignment:
Q  17 agtctgacatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgt 116  Q
    ||||| |||||||| |||||||||||| |||||    |||   | ||||||||||||| ||||||||||||| |||| ||||||||||||||||| ||||    
T  29443072 agtctaacatgtgattcaaaagtagagtgttgtaccccaacgaagcaagagattctgatgagtttgtaatcgttggtcaatggatcaaaaccgaagccgt 29442973  T
Q  117 gaacgcaa 124  Q
    ||| ||||    
T  29442972 gaatgcaa 29442965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 120
Target Start/End: Complemental strand, 29453072 - 29452955
Alignment:
Q  3 ttttagagctaaatagtctgacatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtaatcgctggttaatggatc 102  Q
    |||| ||||| || ||||| |||||||||||| ||||||||  |||| ||||||     |||||||||||||||||||||||||||  | |||| |||||    
T  29453072 ttttcgagctgaagagtctcacatgtgaatcagaagtagagtattgtggatcaacgatacaagagattctgaggagtttgtaatcgacgtttaacggatc 29452973  T
Q  103 aaaaccgaatccgtgaac 120  Q
    |||||| || ||||||||    
T  29452972 aaaaccaaagccgtgaac 29452955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 29423801 - 29423865
Alignment:
Q  174 taggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttca 238  Q
    |||||||||||||  |||||||||| ||||||||||||||| ||||||||||||| | |||||||    
T  29423801 taggaatagggagggaagggataatgcgatgtttacagatggtagggttccagaaagcgatttca 29423865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 337 - 460
Target Start/End: Original strand, 29423934 - 29424055
Alignment:
Q  337 gaaaggatgattgagtggaacggcggtggttaggttagagaaatcctcatcgaactggtagagatcagtgttgagtcgaaggattaaggatcgattg-ag 435  Q
    ||||||| ||||||||  ||||||||| ||||||||||||||||| |    ||  ||||||| ||||| |||| |||||||||||||||| |||||| ||    
T  29423934 gaaaggaggattgagtttaacggcggtagttaggttagagaaatcgtt---gatttggtagaaatcagagttgtgtcgaaggattaaggaacgattgaag 29424030  T
Q  436 ggatttttgaggtgaaggttgatga 460  Q
    | ||| | ||||||||| |||||||    
T  29424031 gaattatggaggtgaagcttgatga 29424055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 29467489 - 29467428
Alignment:
Q  62 caagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgcaa 124  Q
    |||||||||||||| |||||||||||   ||||||||||||||||||||| ||||||||||||    
T  29467489 caagagattctgag-agtttgtaatcatcggttaatggatcaaaaccgaagccgtgaacgcaa 29467428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 460
Target Start/End: Complemental strand, 29442770 - 29442667
Alignment:
Q  355 aacggcggtggttaggttagagaaatcctcatcgaactggtagagatcagtgttgagtcgaaggattaaggatcgattgagg-gatttttgaggtgaagg 453  Q
    |||| |||||||||||||||||||||| ||   ||  ||||||| ||||  |||| |||||||||||||||| |||||||||  ||||| |||||||||     
T  29442770 aacgccggtggttaggttagagaaatcttc---gatttggtagaaatcaaagttgtgtcgaaggattaaggaacgattgaggaaattttggaggtgaagt 29442674  T
Q  454 ttgatga 460  Q
    |||||||    
T  29442673 ttgatga 29442667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 29442926 - 29442867
Alignment:
Q  169 aggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaa 228  Q
    |||| ||||||||||  |||| ||||||||||| ||||||| ||||||||||||||||||    
T  29442926 aggagtaggaataggaggaaaggggataatccggtgtttacggatgttagggttccagaa 29442867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 460
Target Start/End: Complemental strand, 29452756 - 29452659
Alignment:
Q  361 ggtggttaggttagagaaatcctcatcgaactggtagagatcagtgttgagtcgaaggattaaggatcgattgaggg-atttttgaggtgaaggttgatg 459  Q
    ||||||||||||||||||||| |    ||  ||||||| | ||| |||| |||||||||||||||| |||||||||| ||||| ||||||||| ||||||    
T  29452756 ggtggttaggttagagaaatcgtt---gatttggtagaaaacagagttgtgtcgaaggattaaggaacgattgagggaattttggaggtgaagtttgatg 29452660  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 29452918 - 29452859
Alignment:
Q  169 aggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaa 228  Q
    |||||||| ||||||||||  ||| ||| || ||||||||| ||||||||||||||||||    
T  29452918 aggaatagaaatagggagattaggaatattctgatgtttacggatgttagggttccagaa 29452859  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 29467384 - 29467333
Alignment:
Q  177 gaatagggagaaaagggataatccgatgtttacagatgttagggttccagaa 228  Q
    |||||||||||  ||| |||||||||||||||| ||||||||| ||||||||    
T  29467384 gaatagggagattaggaataatccgatgtttacggatgttaggattccagaa 29467333  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 29423702 - 29423760
Alignment:
Q  66 agattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgcaa 124  Q
    ||||| ||||||||||||||||    |||||||||||||||||||| |||| |||||||    
T  29423702 agattgtgaggagtttgtaatcatcagttaatggatcaaaaccgaagccgtaaacgcaa 29423760  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 29463559 - 29463510
Alignment:
Q  169 aggaataggaatagggagaaaagggataatccgatgtttacagatgttag 218  Q
    |||| ||||||||||| || |||||||||||| |||||||| ||||||||    
T  29463559 aggagtaggaatagggggataagggataatccaatgtttacggatgttag 29463510  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 26575304 - 26575364
Alignment:
Q  63 aagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgca 123  Q
    ||||||||||||||||||||||||||| || ||| | |||||||||||| |||||||||||    
T  26575304 aagagattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccgtgaacgca 26575364  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 460
Target Start/End: Original strand, 26575666 - 26575720
Alignment:
Q  407 ttgagtcgaaggattaaggatcgattgaggg-atttttgaggtgaaggttgatga 460  Q
    |||| |||||||||||||||||||||| ||| |||| ||||||||||||||||||    
T  26575666 ttgaatcgaaggattaaggatcgattgggggaatttctgaggtgaaggttgatga 26575720  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 26575411 - 26575472
Alignment:
Q  176 ggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttc 237  Q
    |||| ||||||||||||||||||||||| ||||| | ||| ||||||||||| || ||||||    
T  26575411 ggaagagggagaaaagggataatccgatatttaccggtgtaagggttccagattgcgatttc 26575472  T

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