View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20574_high_1 (Length: 692)

Name: NF20574_high_1
Description: NF20574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20574_high_1
NF20574_high_1
[»] chr2 (38 HSPs)
chr2 (17-671)||(44624644-44625298)
chr2 (17-351)||(44615271-44615605)
chr2 (21-362)||(39152928-39153266)
chr2 (23-338)||(39138517-39138826)
chr2 (41-362)||(39396627-39396945)
chr2 (32-397)||(39216537-39216899)
chr2 (41-335)||(39371006-39371297)
chr2 (37-330)||(44895114-44895404)
chr2 (32-362)||(39196485-39196812)
chr2 (105-335)||(39380496-39380723)
chr2 (20-338)||(39472763-39473084)
chr2 (498-608)||(44748549-44748659)
chr2 (37-362)||(39387469-39387791)
chr2 (32-337)||(39205742-39206044)
chr2 (104-362)||(39421161-39421413)
chr2 (32-337)||(39223594-39223893)
chr2 (177-362)||(39413004-39413186)
chr2 (514-659)||(44749177-44749314)
chr2 (24-349)||(39604188-39604510)
chr2 (504-618)||(44615921-44616034)
chr2 (24-352)||(39099459-39099784)
chr2 (164-353)||(39188738-39188927)
chr2 (211-337)||(39478294-39478420)
chr2 (498-553)||(2363528-2363583)
chr2 (20-244)||(39493532-39493753)
chr2 (496-545)||(39471516-39471565)
chr2 (447-499)||(44749485-44749538)
chr2 (500-556)||(39131267-39131323)
chr2 (518-556)||(39379560-39379598)
chr2 (498-574)||(39419835-39419911)
chr2 (96-136)||(44749735-44749775)
chr2 (516-551)||(39372205-39372240)
chr2 (504-555)||(39493082-39493133)
chr2 (20-94)||(39144464-39144538)
chr2 (496-554)||(39179696-39179753)
chr2 (496-553)||(39139976-39140033)
chr2 (500-553)||(39503146-39503199)
chr2 (516-556)||(39125284-39125324)
[»] chr5 (4 HSPs)
chr5 (20-363)||(17060514-17060854)
chr5 (32-362)||(33562169-33562496)
chr5 (499-572)||(17061211-17061284)
chr5 (496-554)||(33563363-33563420)
[»] chr8 (8 HSPs)
chr8 (194-338)||(44730154-44730298)
chr8 (137-360)||(45342947-45343170)
chr8 (195-363)||(44949869-44950037)
chr8 (34-167)||(44950036-44950169)
chr8 (498-540)||(44947455-44947497)
chr8 (463-504)||(44949676-44949717)
chr8 (34-83)||(44730102-44730151)
chr8 (463-491)||(44730652-44730680)
[»] chr7 (1 HSPs)
chr7 (152-338)||(19808900-19809083)
[»] chr6 (1 HSPs)
chr6 (41-265)||(16114256-16114477)
[»] scaffold0283 (3 HSPs)
scaffold0283 (195-363)||(5849-6017)
scaffold0283 (498-540)||(3434-3476)
scaffold0283 (463-504)||(5656-5697)


Alignment Details
Target: chr2 (Bit Score: 623; Significance: 0; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 17 - 671
Target Start/End: Original strand, 44624644 - 44625298
Alignment:
Q  17 aattgacattcttgataatttgcgagaatcatcagatccagcaaaaattgttttggatattacactgaaccccattatcccacttcctaagaagggagac 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||    
T  44624644 aattgacattcttgataatttgcgagaatcatcagatccagcaaaaattgttttggatataatactgaaccccattatcccacttcctaagaaaggagac 44624743  T
Q  117 aaagctgtgattattgatgatgaaagccgcatctatctgctagaaaaactgatgacaatctcaccaaatattaaaccttgtgtaagagatgaagcattga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44624744 aaagctgtgattattgatgatgaaagccgcatctatctgctagaaaaactgatgacaatctcaccaaatattaaaccttgtgtaagagatgaagcattga 44624843  T
Q  217 agctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggattgcatac 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44624844 agctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattatttggaggttctcggatttctattgattttgtcgatttatggattgcatac 44624943  T
Q  317 ttattttgatgaagatgaagtcataaagctttttggatctgttgctggatacaagatggctgaagaactgtttgagaccctccatattggttttgctaat 416  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44624944 ttattttgatgaagatgaagtctaaaagctttttggatctgttgctggatacaagatggctgaagaactgtttgagaccctccatattggttttgctaat 44625043  T
Q  417 taaatttatggtatgtctctatgcattgttatgttacatcatacaatatcaaatccatattgcaattttgtatctaatcatgttttgatgaagtgaattt 516  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44625044 taaatttatggtatgtctctatgcattgttatgttacatcattcaatatcaaatccatattgcaattttgtatctaatcatgttttgatgaagtgaattt 44625143  T
Q  517 ttcttacaccttgcagattttgttgagaatcttatcaagatggagaaatttgattcagttacttggttgagaagaatgaacaagtttttgcagttgaaaa 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44625144 ttcttacaccttgcagattttgttgagaatcttatcaagatggagaaatttgattcagttacttggttgagaagaatgaacaagtttttgcagttgaaaa 44625243  T
Q  617 atgtaatgtaaagaaatgtggtgtactagtggaaacctgctaaataggattagac 671  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44625244 atgtaatgtaaagaaatgtgatgtactagtggaaacctgctaaataggattagac 44625298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 17 - 351
Target Start/End: Original strand, 44615271 - 44615605
Alignment:
Q  17 aattgacattcttgataatttgcgagaatcatcagatccagcaaaaattgttttggatattacactgaaccccattatcccacttcctaagaagggagac 116  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||| |  || ||||| |||||||| ||||||    
T  44615271 aattggcattctagataatttgcgagaatcatcagatccagcaaaacttgttttggatataatactaaaccctacgattccactgcctaagaaaggagac 44615370  T
Q  117 aaagctgtgattattgatgatgaaagccgcatctatctgctagaaaaactgatgacaatctcaccaaatatta---aaccttgtgtaagagatgaagcat 213  Q
    ||||| |||||||||||||| |   || | ||||||||||||||| ||||||||| |||||||||||||||||   || ||||||||||||||||||| |    
T  44615371 aaagcggtgattattgatgaag---gctggatctatctgctagaacaactgatgataatctcaccaaatattattaaatcttgtgtaagagatgaagcgt 44615467  T
Q  214 tgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggattgca 313  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||| |||||||| ||||||      
T  44615468 tgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggattggt 44615567  T
Q  314 tacttattttgatgaagatgaagtcataaagctttttg 351  Q
    || ||| |||||||||||||||||| | ||| ||||||    
T  44615568 taattactttgatgaagatgaagtcttcaagatttttg 44615605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 21 - 362
Target Start/End: Original strand, 39152928 - 39153266
Alignment:
Q  21 gacattcttgataatttgcgagaatcatcagatccagcaaaaattgttttggatattacactgaaccccattatcccacttcctaagaagggagacaaag 120  Q
    |||||||| |||||  ||| ||||||||||||||||||||||||||| |||||||| | || |||||| ||||| ||||    |||||| |||||| | |    
T  39152928 gacattctagataacctgcaagaatcatcagatccagcaaaaattgtgttggatataatacagaacccaattattccacggtataagaacggagaccatg 39153027  T
Q  121 ctgtgattattgatgatgaaagccgcatctatctgctagaaaaactgatgacaatctcaccaaatattaaaccttgtgtaagagatgaagcattgaagct 220  Q
    |||||||||| |||| |   ||| |||||| |||||||||| ||||||||| ||||||||| || |||||||||||||||||||| ||||||||||| ||    
T  39153028 ctgtgattatagatggt---agctgcatctttctgctagaacaactgatgagaatctcaccgaagattaaaccttgtgtaagagaagaagcattgaaact 39153124  T
Q  221 agcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggattgcatacttat 320  Q
     || | ||| ||||||||||| || ||||||||||||||||||||||||| |||||| || |||||| || ||||||||||||||||||||  ||||| |    
T  39153125 cgcacatgatttgaaagctaaaataaaagaaaatactgaaaattctttggtggttcttggttttctactggttttgtcgatttatggattggttacttct 39153224  T
Q  321 tttgatgaagatgaagtcataaagctttttggatctgttgct 362  Q
    || ||| ||||||||||| |  ||||||||| || |||||||    
T  39153225 ttcgataaagatgaagtcttggagctttttgcatttgttgct 39153266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 23 - 338
Target Start/End: Original strand, 39138517 - 39138826
Alignment:
Q  23 cattcttgataatttgcgagaatcatcagatccagcaaaaattgttttggatattacactgaaccccattatcccacttcctaagaagggagacaaagct 122  Q
    |||||| | |||| ||| |||||||||||||||||||||| ||||||||||||| | || ||| || ||||| ||||    |||||| |||||  | |||    
T  39138517 cattctagttaatctgcaagaatcatcagatccagcaaaagttgttttggatataatacagaagccaattattccacggtgtaagaatggagaacatgct 39138616  T
Q  123 gtgattattgatgatgaaagccgcatctatctgctagaaaaactgatgacaatctcaccaaatattaaaccttgtgtaagagatgaagcattgaagctag 222  Q
    ||||||||||||||||   || |||||| |||||||||| ||||||||| ||||||||| || |||||||||  ||||||||| ||||||||||||||||    
T  39138617 gtgattattgatgatg---gctgcatctttctgctagaacaactgatgagaatctcaccgaagattaaacctgatgtaagagaagaagcattgaagctag 39138713  T
Q  223 cgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggattgcatacttattt 322  Q
    | | | |  |||||||||||||||||   ||||||||||||||| ||| ||||||||| |||||| ||||||||||  |||||| ||||| |||||||||    
T  39138714 cacttaatctgaaagctaacatgaaa---aatactgaaaattctctggtggttctcggttttctactgattttgtcagtttatgaattgcttacttattt 39138810  T
Q  323 tgatgaagatgaagtc 338  Q
    ||||||||||||||||    
T  39138811 tgatgaagatgaagtc 39138826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 41 - 362
Target Start/End: Complemental strand, 39396945 - 39396627
Alignment:
Q  41 agaatcatcagatccagcaaaaattgttttggatattacactgaaccccattatcccacttcctaagaagggagacaaagctgtgattattgatgatgaa 140  Q
    |||||||||||||||| ||| | ||||||||||||| | ||  ||||||||||| |||||   ||||||||||||||| | |||| ||||||| |||       
T  39396945 agaatcatcagatccatcaagacttgttttggatataatacaaaaccccattattccactgtgtaagaagggagacaatggtgtggttattgaggat--- 39396849  T
Q  141 agccgcatctatctgctagaaaaactgatgacaatctcaccaaatattaaaccttgtgtaagagatgaagcattgaagctagcgcgtgagttgaaagcta 240  Q
    |||| ||||||  |||||||| ||||||||| ||||||||||| ||||| ||||||||||||||| |||||| |||||||||| | ||| |||| ||||     
T  39396848 agccacatctacgtgctagaagaactgatgagaatctcaccaactattagaccttgtgtaagagaagaagcactgaagctagcacatgatttgagagctt 39396749  T
Q  241 acatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggattgcatacttattttgatgaagatgaagtcat 340  Q
    |||| | ||||||||||||||||||||||| |||||| || ||| | ||| ||||||| ||||||||||||| ||||| ||| ||||||||||||||  |    
T  39396748 acattagagaaaatactgaaaattctttggcggttcttggttttttgttgcttttgtcaatttatggattgcttacttctttcgatgaagatgaagtttt 39396649  T
Q  341 aaagctttttggatctgttgct 362  Q
      ||||||||| ||| ||||||    
T  39396648 ggagctttttgcatcggttgct 39396627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 32 - 397
Target Start/End: Original strand, 39216537 - 39216899
Alignment:
Q  32 taatttgcgagaatcatcagatccagcaaaaattgttttggatattacactgaaccccattatcccacttcctaagaagggagacaaagctgtgattatt 131  Q
    |||||||| ||| |||||||||||| ||| | ||||||||||||| | || |||||| | ||| | | |   ||||||||||||||| ||||||||||||    
T  39216537 taatttgctagactcatcagatccatcaagacttgttttggatatgatacagaaccctactattcaattgtgtaagaagggagacaatgctgtgattatt 39216636  T
Q  132 gatgatgaaagccgcatctatctgctagaaaaactgatgacaatctcaccaaatattaaaccttgtgtaagagatgaagcattgaagctagcgcgtgagt 231  Q
    | |||| |   ||  || |||  ||||||| ||||||||| |||||||||  |||||||||||||||||||||| |||||||||||||||||   ||| |    
T  39216637 gctgatta---ccatatttattcgctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatt 39216733  T
Q  232 tgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggattgcatacttattttgatgaaga 331  Q
    ||||| |||||||||  ||||||||| |||||||||||| ||||||||| |||||  || ||||||| ||||||||||||  ||||| ||||| ||||||    
T  39216734 tgaaatctaacatgagtgaaaatactaaaaattctttggtggttctcggttttcttctgcttttgtcaatttatggattggttacttcttttggtgaaga 39216833  T
Q  332 tgaagtcataaagctttttggatctgttgctggatacaagatggctgaagaactgtttgagaccct 397  Q
    ||||||  |  ||||||||| ||||||||||    ||||||| |||   |||||||||||||||||    
T  39216834 tgaagttttggagctttttgcatctgttgctcagcacaagatagctattgaactgtttgagaccct 39216899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 41 - 335
Target Start/End: Original strand, 39371006 - 39371297
Alignment:
Q  41 agaatcatcagatccagcaaaaattgttttggatattacactgaaccccattatcccacttcctaagaagggagacaaagctgtgattattgatgatgaa 140  Q
    |||||||||||||||| ||| | ||||||||||||| | || |||  ||||| | |||||   ||||||||||||||| | ||| ||||||| |||| |     
T  39371006 agaatcatcagatccatcaagatttgttttggatatgatacagaataccattgttccactgagtaagaagggagacaatgttgtaattattgctgatta- 39371104  T
Q  141 agccgcatctatctgctagaaaaactgatgacaatctcaccaaatattaaaccttgtgtaagagatgaagcattgaagctagcgcgtgagttgaaagcta 240  Q
      ||  |||   ||||||||| |||| |||| |||||||||||||||| | |||||||||||||||||||||||||||||||| | |||  ||||||| |    
T  39371105 --ccaaatcctgctgctagaacaacttatgaaaatctcaccaaatattgagccttgtgtaagagatgaagcattgaagctagcacttgatatgaaagcca 39371202  T
Q  241 acatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggattgcatacttattttgatgaagatgaa 335  Q
    ||||||||||||||| | ||||| |||||| |||||| || ||||||||| ||||||| | ||||||||||  ||||| ||||||||||||||||    
T  39371203 acatgaaagaaaatagtaaaaatcctttggtggttcttggttttctattgcttttgtcaaattatggattggttacttcttttgatgaagatgaa 39371297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 37 - 330
Target Start/End: Complemental strand, 44895404 - 44895114
Alignment:
Q  37 tgcgagaatcatcagatccagcaaaaattgttttggatattacactgaaccccattatcccacttcctaagaagggagacaaagctgtgattattgatga 136  Q
    |||||||||||||| |||| |||||| ||||||||||||| | || |||||| | ||| |||||   ||||||||  ||||| | | || ||||||||||    
T  44895404 tgcgagaatcatcaaatcctgcaaaacttgttttggatataatacagaaccctagtatgccactgagtaagaaggatgacaatgatttggttattgatga 44895305  T
Q  137 tgaaagccgcatctatctgctagaaaaactgatgacaatctcaccaaatattaaaccttgtgtaagagatgaagcattgaagctagcgcgtgagttgaaa 236  Q
    |    | ||||||||||||||||||| |||||||  ||| ||||||| |||||||||| ||||||||||  |||||||||||||||| | | | || |||    
T  44895304 tt---ggcgcatctatctgctagaaacactgatgggaatgtcaccaattattaaacctcgtgtaagagaacaagcattgaagctagcacataaattcaaa 44895208  T
Q  237 gctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggattgcatacttattttgatgaag 330  Q
    |||||||| |||| |||||||||||||||||||| |||||| || |||||| || ||||||| ||||||||||||  ||||| ||| |||||||    
T  44895207 gctaacataaaaggaaatactgaaaattctttggtggttcttggttttctactgcttttgtcaatttatggattgattacttctttcgatgaag 44895114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 32 - 362
Target Start/End: Complemental strand, 39196812 - 39196485
Alignment:
Q  32 taatttgcgagaatcatcagatccagcaaaaattgttttggatattacactgaaccccattatcccacttcctaagaagggagacaaagctgtgattatt 131  Q
    |||| ||| |||||||||||||||| ||||| |||||||||| || | |||||||||||| || ||||      | |||||||| || |||||| |||||    
T  39196812 taatctgcaagaatcatcagatccatcaaaacttgttttggaaatgatactgaaccccatcattccacagtgggaaaagggagataatgctgtggttatt 39196713  T
Q  132 gatgatgaaagccgcatctatctgctagaaaaactgatgacaatctcaccaaatattaaaccttgtgtaagagatgaagcattgaagctagcgcgtgagt 231  Q
    | |||| |   ||  ||||||||||| ||| ||||||||| |||||||||| |||||||||||||||| ||| | |||||||||||||||||   ||| |    
T  39196712 gttgatta---ccaaatctatctgctggaacaactgatgagaatctcaccagatattaaaccttgtgtgagaaaagaagcattgaagctagcatttgatt 39196616  T
Q  232 tgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggattgcatacttattttgatgaaga 331  Q
    |||||||||||||||| || ||||||||||||||||||| |||||| || |||||  || ||||||| ||||||  ||||| |  || ||||||||||||    
T  39196615 tgaaagctaacatgaatgacaatactgaaaattctttggcggttcttggctttctgctgcttttgtcaatttataaattgcttgattcttttgatgaaga 39196516  T
Q  332 tgaagtcataaagctttttggatctgttgct 362  Q
    ||||||  |  ||||||||| || |||||||    
T  39196515 tgaagttttggagctttttgcatttgttgct 39196485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 105 - 335
Target Start/End: Complemental strand, 39380723 - 39380496
Alignment:
Q  105 aagaagggagacaaagctgtgattattgatgatgaaagccgcatctatctgctagaaaaactgatgacaatctcaccaaatattaaaccttgtgtaagag 204  Q
    |||||||||||||| ||||||||| || |||||   |||||||||| |||||||||| ||||||||| | ||||||| |||||| ||  |||||||||||    
T  39380723 aagaagggagacaatgctgtgattttttatgat---agccgcatctttctgctagaacaactgatgagagtctcaccgaatattgaagattgtgtaagag 39380627  T
Q  205 atgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgattta 304  Q
    | |||||| ||| |||||| | ||| ||||||||| |||| | ||| ||||||||| ||||| ||| |||||| ||||||||| || ||||||| |||||    
T  39380626 aagaagcactgacgctagcacttgatttgaaagcttacataagagagaatactgaagattctgtggcggttcttggatttctactgcttttgtcaattta 39380527  T
Q  305 tggattgcatacttattttgatgaagatgaa 335  Q
    |||||||| ||||| ||| ||||||||||||    
T  39380526 tggattgcttacttctttcgatgaagatgaa 39380496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 20 - 338
Target Start/End: Complemental strand, 39473084 - 39472763
Alignment:
Q  20 tgacattcttgataatttgcgagaatcatcagatccagcaaaaattgttttggatattacactgaaccccattatcccacttcctaagaagggagacaaa 119  Q
    ||||||||| | | || ||| |||||||||||||||||||||| ||||| ||||||| | ||||||||| ||||| ||||    ||||||||||||| |     
T  39473084 tgacattctagttgatctgcaagaatcatcagatccagcaaaatttgttctggatataatactgaacccgattattccacggtgtaagaagggagaccat 39472985  T
Q  120 gctgtgattattgatgatgaaagccgcatctatctgctagaaaaactgatgacaatctcacca------aatattaaaccttgtgtaagagatgaagcat 213  Q
    |||||||||||||||| |   |||  ||||| |||| | ||| | ||||||| |||||||||       || ||||  |||||||||| | | || ||||    
T  39472984 gctgtgattattgatggt---agcaacatctttctgttggaacagctgatgaaaatctcaccgtcactgaagattagcccttgtgtaaaaaaagacgcat 39472888  T
Q  214 tgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggattgca 313  Q
    ||||||| || | ||| ||||||| ||||||||||||||||||||||||||||||||  ||||| || |||||| || ||||||| ||||||| |||||     
T  39472887 tgaagctcgcacttgatttgaaagttaacatgaaagaaaatactgaaaattctttggtagttcttggttttctactgcttttgtcaatttatgaattgct 39472788  T
Q  314 tacttattttgatgaagatgaagtc 338  Q
    ||||| |||||||||||||||||||    
T  39472787 tacttcttttgatgaagatgaagtc 39472763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 498 - 608
Target Start/End: Original strand, 44748549 - 44748659
Alignment:
Q  498 gttttgatgaagtgaatttttcttacaccttgcagattttgttgagaatcttatcaagatggagaaatttgattcagttacttggttgagaagaatgaac 597  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| |||    
T  44748549 gtttttatgaagtgaatttttcttacaccttgcagattttgttgagaatcttatcaagatgaagaaatttgattcagttacttgattgggaagaatcaac 44748648  T
Q  598 aagtttttgca 608  Q
    |||||||||||    
T  44748649 aagtttttgca 44748659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 37 - 362
Target Start/End: Complemental strand, 39387791 - 39387469
Alignment:
Q  37 tgcgagaatcatcagatccagcaaaaattgttttggatattacactgaaccccattatcccacttcctaagaagggagacaaagctgtgattattgatga 136  Q
    ||||||||||||| || ||| ||||| ||||||||||||| | | |||||||  |||| |||||   | | ||||  |||||  |||||||||||| |||    
T  39387791 tgcgagaatcatcggacccatcaaaacttgttttggatatgatattgaaccctgttattccactgtgtcaaaaggttgacaattctgtgattattgctga 39387692  T
Q  137 tgaaagccgcatctatctgctagaaaaactgatgacaatctcaccaaatattaaaccttgtgtaagagatgaagcattgaagctagcgcgtgagttgaaa 236  Q
    | |   ||  ||| || |||||||| ||||||||| || ||||||||| ||| || ||||||||| | | ||||||||||||||||||||||| || |||    
T  39387691 tta---ccaaatccatatgctagaacaactgatgagaacctcaccaaaaattgaaacttgtgtaaaaaaagaagcattgaagctagcgcgtgatttaaaa 39387595  T
Q  237 gctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggattgcatacttattttgatgaagatgaag 336  Q
    ||||||||||||||||||||||||||||||||||  ||||| || |||||  || ||||||| ||||||||  ||| |  ||||||||| ||||||||||    
T  39387594 gctaacatgaaagaaaatactgaaaattctttggccgttcttggttttctgctgcttttgtcaatttatgggctgcttgattattttgacgaagatgaag 39387495  T
Q  337 tcataaagctttttggatctgttgct 362  Q
    |  |  ||||||||| || |||||||    
T  39387494 ttttggagctttttgcatttgttgct 39387469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 32 - 337
Target Start/End: Complemental strand, 39206044 - 39205742
Alignment:
Q  32 taatttgcgagaatcatcagatccagcaaaaattgttttggatattacactgaaccccattatcccact-tcctaagaagggagacaaagctgtgattat 130  Q
    |||| ||| ||||||| |||||||| ||||| |||||||||| || | |||||||||||| |  ||||| | | || |||||||| || | |||||||||    
T  39206044 taatctgcaagaatcagcagatccatcaaaacttgttttggaaatgatactgaaccccatcactccactgtgccaa-aagggagataatgttgtgattat 39205946  T
Q  131 tgatgatgaaagccgcatctatctgctagaaaaactgatgacaatctcaccaaatattaaaccttgtgtaagagatgaagcattgaagctagcgcgtgag 230  Q
    || |||| |   ||  || |||||||| ||| ||||||||| ||||||||||  |||| |||||||||| |||||  ||||||||||||||||   |||     
T  39205945 tgctgatta---ccaaatatatctgcttgaacaactgatgagaatctcaccagttattgaaccttgtgtgagagaaaaagcattgaagctagcatttgac 39205849  T
Q  231 ttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggattgcatacttattttgatgaag 330  Q
    ||||||||||| |||||||||||||||||||||||| ||| |||||| || |||||| || ||||||||||||||  ||||| |  || ||||||| |||    
T  39205848 ttgaaagctaagatgaaagaaaatactgaaaattctatggcggttcttggttttctactgcttttgtcgatttataaattgcttgattcttttgataaag 39205749  T
Q  331 atgaagt 337  Q
    |||||||    
T  39205748 atgaagt 39205742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 104 - 362
Target Start/End: Complemental strand, 39421413 - 39421161
Alignment:
Q  104 taagaagggagacaaagctgtgattattgatgatgaaagccgcatctatctgctagaaaaactgatgacaatctcaccaaatattaaaccttgtgtaaga 203  Q
    ||||||||||||||| | || ||||||||| || |||  || ||||| |||||||||| ||||||||| |||||||||| |||||||| ||||||||| |    
T  39421413 taagaagggagacaatgatgcgattattgaaga-gaa--ccacatctttctgctagaacaactgatgaaaatctcaccacatattaaaacttgtgtaaaa 39421317  T
Q  204 gatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgattt 303  Q
    || |||||||||||||| || | ||| ||||||||||| ||| |||||||||||||||||  |||   ||||||||| |||||| || ||||||| ||||    
T  39421316 gaagaagcattgaagctcgctcttgatttgaaagctaatatggaagaaaatactgaaaataattt---ggttctcggttttctactgcttttgtcaattt 39421220  T
Q  304 atggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 362  Q
    |   ||||  |||||||||  |||||||||||||  |  ||||||||| || |||||||    
T  39421219 accaattggttacttatttcaatgaagatgaagtgttggagctttttgcatttgttgct 39421161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 32 - 337
Target Start/End: Original strand, 39223594 - 39223893
Alignment:
Q  32 taatttgcgagaatcatcagatccagcaaaaattgttttggatattacactgaaccccattatcccacttcctaagaagggagacaaagctgtgattatt 131  Q
    |||| ||| |||||||||||||||| ||||| |||||||||| || | |||||||||||| || ||||    | | |||||||||||   ||||||||||    
T  39223594 taatctgcaagaatcatcagatccatcaaaacttgttttggaaatgatactgaaccccatcattccacggtgtcaaaagggagacaa---tgtgattatt 39223690  T
Q  132 gatgatgaaagccgcatctatctgctagaaaaactgatgacaatctcaccaaatattaaaccttgtgtaagagatgaagcattgaagctagcgcgtgagt 231  Q
      |||| |   ||  ||| |||| || ||| ||||||||| |||||||||| ||||| |||||||||  |||||  ||||||||||||||||   ||| |    
T  39223691 actgatta---ccaaatccatctacttgaacaactgatgagaatctcaccagatattgaaccttgtgagagagaaaaagcattgaagctagcatatgatt 39223787  T
Q  232 tgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggattgcatacttattttgatgaaga 331  Q
    | ||||  ||||||||||| ||||||||||| ||||||| |||||| || |||||  || ||||||| ||||||  ||||| |  ||  |||||||||||    
T  39223788 taaaagaaaacatgaaagacaatactgaaaaatctttggcggttcttggttttctgctgcttttgtcaatttataaattgcttgattcatttgatgaaga 39223887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 177 - 362
Target Start/End: Complemental strand, 39413186 - 39413004
Alignment:
Q  177 tcaccaaatattaaaccttgtgtaagagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttc 276  Q
    ||||||||||  ||||||||||||| |||   ||||||||||||||| | ||| |||||||||||| ||||||||||||| ||||| ||||||| |||||    
T  39413186 tcaccaaataacaaaccttgtgtaaaaga---agcattgaagctagcacttgatttgaaagctaacttgaaagaaaataccgaaaactctttggcggttc 39413090  T
Q  277 tcggatttctattgattttgtcgatttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 362  Q
    |  | ||||| ||| |||||||  ||| |||||||  ||||| ||| |||||||||||| || |  ||||||||| || |||||||    
T  39413089 ttagttttctgttgcttttgtcagtttgtggattggttacttttttggatgaagatgaaatcttggagctttttgcatttgttgct 39413004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 514 - 659
Target Start/End: Complemental strand, 44749314 - 44749177
Alignment:
Q  514 tttttcttacaccttgcagattttgttgagaatcttatcaagatggagaaatttgattcagttacttggttgagaagaatgaacaagtttttgcagttga 613  Q
    ||||| ||||||||| |||||||| |||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||| |||||| ||||||| | |     
T  44749314 ttttttttacacctttcagattttattgagaatgttatcaagatgaagaaa-ttgattcagttacttggctgagaagaatcaacaagattttgcactagg 44749216  T
Q  614 aaaatgtaatgtaaagaaatgtggtgtactagtggaaacctgctaa 659  Q
    ||||| ||    ||||||||||||||   |||||||||||||||||    
T  44749215 aaaatcta----aaagaaatgtggtg---tagtggaaacctgctaa 44749177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 24 - 349
Target Start/End: Original strand, 39604188 - 39604510
Alignment:
Q  24 attcttgataatttgcgagaatcatcagatccagcaaaaattgttttggatattacactgaaccccattatcccacttcctaagaagggagacaaagctg 123  Q
    ||||| |||||| ||| || ||||||||||||| ||||| ||||||||||||| | || ||| |||||||| | |     ||||| ||||||||| ||||    
T  39604188 attctagataatctgcaaggatcatcagatccatcaaaagttgttttggatataatacagaatcccattattcaaaagtataagatgggagacaatgctg 39604287  T
Q  124 tgattattgatgatgaaagccgcatctatctgctagaaaaactgatgacaatctcaccaaatattaaaccttgtgtaagagatgaagcattgaagctagc 223  Q
    | ||||||||||||   ||   |||   ||||||  || ||||||||| ||||  |||| ||||||||||| |||||||||| |||||| ||||||||||    
T  39604288 taattattgatgat---agagacattcttctgctcaaacaactgatgagaatcaaaccacatattaaacctcgtgtaagagaagaagcaatgaagctagc 39604384  T
Q  224 gcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggattgcatacttatttt 323  Q
     | | | |||||| ||||||| |  |||||||| |||||||   |||  ||||| || |||||| |  || |||| ||||||||||||  | ||| |||     
T  39604385 acttaatttgaaatctaacataagtgaaaataccgaaaatttggtggcagttctgggttttctactccttgtgtcaatttatggattggctccttctttc 39604484  T
Q  324 gatgaagatgaagtcataaagctttt 349  Q
    ||||||||||||||  ||||||||||    
T  39604485 gatgaagatgaagttttaaagctttt 39604510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 504 - 618
Target Start/End: Original strand, 44615921 - 44616034
Alignment:
Q  504 atgaagtgaatttttcttacaccttgcagattttgttgagaatcttatcaagatggagaaatttgattcagttacttggttgagaagaatgaacaagttt 603  Q
    |||| |||||||||||||||||||||||||||||||||||||  |  |||||||| |||||||||||||||||| ||||  |||||| || |||||||||    
T  44615921 atgatgtgaatttttcttacaccttgcagattttgttgagaa-atattcaagatgaagaaatttgattcagttaattggccgagaaggatcaacaagttt 44616019  T
Q  604 ttgcagttgaaaaat 618  Q
     |||| | |||||||    
T  44616020 ctgcactagaaaaat 44616034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 24 - 352
Target Start/End: Original strand, 39099459 - 39099784
Alignment:
Q  24 attcttgataatttgcgagaatcatcagatccagcaaaaattgttttggatattacactgaaccccattatcccacttcctaagaagggagacaaagctg 123  Q
    ||||| |||||| ||| || || |||||||||| ||||| | ||||||||||| | || ||| |||||||| | |     ||||| ||||||||| ||||    
T  39099459 attctagataatctgcaaggattatcagatccatcaaaagtcgttttggatataatacagaatcccattattcaaaagtataagatgggagacaatgctg 39099558  T
Q  124 tgattattgatgatgaaagccgcatctatctgctagaaaaactgatgacaatctcaccaaatattaaaccttgtgtaagagatgaagcattgaagctagc 223  Q
    | |||||||||||   |||   |||   |||||| ||| ||||||||| |||||||||| |||| ||||||||||||||||| |||||  ||||||| ||    
T  39099559 taattattgatga---aagagacattcttctgctcgaacaactgatgagaatctcaccacatatcaaaccttgtgtaagagaagaagcgatgaagctggc 39099655  T
Q  224 gcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggattgcatacttatttt 323  Q
     | | |||||||| ||   || |  |||| ||||||||||||  ||| |||||| || |||||| |  || |||| ||||||  ||||  | ||| ||||    
T  39099656 acttaagttgaaatcttttataagtgaaactactgaaaattcggtggcggttcttggttttctactccttctgtcaatttataaattggctccttctttt 39099755  T
Q  324 gatgaagatgaagtcataaagctttttgg 352  Q
    ||||||||||||||  |||||||||||||    
T  39099756 gatgaagatgaagttttaaagctttttgg 39099784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 164 - 353
Target Start/End: Complemental strand, 39188927 - 39188738
Alignment:
Q  164 actgatgacaatctcaccaaatattaaaccttgtgtaagagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaat 263  Q
    |||||||| |||||||||  | |||||||||  ||||||||| || ||| |||| ||||| | ||| || |||||||||||||||||||||| || ||||    
T  39188927 actgatgagaatctcacctgacattaaacctcatgtaagagaggatgcaatgaaactagcacttgatttaaaagctaacatgaaagaaaataatggaaat 39188828  T
Q  264 tctttggaggttctcggatttctattgattttgtcgatttatggattgcatacttattttgatgaagatgaagtcataaagctttttgga 353  Q
    ||||||| |||||| || |||||| |  || | || |||||||| |||  | ||| |||  |||||||||| ||  ||||||||||||||    
T  39188827 tctttggtggttcttggttttctactccttctatcaatttatggtttggttccttctttcaatgaagatgatgttttaaagctttttgga 39188738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 211 - 337
Target Start/End: Complemental strand, 39478420 - 39478294
Alignment:
Q  211 cattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggatt 310  Q
    ||||||||||||| | ||| ||||||||| |||| | |||||||||||||||||||| ||  ||||| |  |||||| || ||||||| |||||||||||    
T  39478420 cattgaagctagcacatgatttgaaagcttacatcagagaaaatactgaaaattcttcggcagttcttgattttctactgcttttgtcaatttatggatt 39478321  T
Q  311 gcatacttattttgatgaagatgaagt 337  Q
    || ||||| ||| || |||| ||||||    
T  39478320 gcttacttctttcgaagaaggtgaagt 39478294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 498 - 553
Target Start/End: Original strand, 2363528 - 2363583
Alignment:
Q  498 gttttgatgaagtgaatttttcttacaccttgcagattttgttgagaatcttatca 553  Q
    |||||||||||||||| ||||| | |||||||||||||||||| ||||||||||||    
T  2363528 gttttgatgaagtgaaattttcctgcaccttgcagattttgttcagaatcttatca 2363583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 39493753 - 39493532
Alignment:
Q  20 tgacattcttgataatttgcgagaatcatcagatccagcaaaaattgttttggatattacactgaaccccattatcccacttcctaagaagggagacaaa 119  Q
    ||||||||||| | || ||| || ||||||||||||| ||||| ||||||||||||| | || ||||||||||||   |     |||||  |||||| |     
T  39493753 tgacattcttggttatctgcaaggatcatcagatccatcaaaagttgttttggatataatacagaaccccattattaaaaagtgtaagataggagacgat 39493654  T
Q  120 gctgtgattattgatgatgaaagccgcatctatctgctagaaaaactgatgacaatctcaccaaatattaaaccttgtgtaagagatgaagcattgaagc 219  Q
    ||||  ||||||||||||   |||| |||   |||||| ||| |||||| || |||||||||| |||||| ||||  ||||| ||| |||||| ||||||    
T  39493653 gctgcaattattgatgat---agccacattcttctgctcgaagaactgaggaaaatctcaccagatattagacctcatgtaaaagaagaagcaatgaagc 39493557  T
Q  220 tagcgcgtgagttgaaagctaacat 244  Q
    |||| | |||  |||||||||||||    
T  39493556 tagcacttgatatgaaagctaacat 39493532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 496 - 545
Target Start/End: Complemental strand, 39471565 - 39471516
Alignment:
Q  496 atgttttgatgaagtgaatttttcttacaccttgcagattttgttgagaa 545  Q
    ||||||||||||||||||||||| ||  ||||||||||||||||||||||    
T  39471565 atgttttgatgaagtgaattttttttgtaccttgcagattttgttgagaa 39471516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 447 - 499
Target Start/End: Complemental strand, 44749538 - 44749485
Alignment:
Q  447 atgttacatcatacaat-atcaaatccatattgcaattttgtatctaatcatgt 499  Q
    ||||||||||||| ||| |||||||||||||| |||||||||||||||||||||    
T  44749538 atgttacatcatataattatcaaatccatattccaattttgtatctaatcatgt 44749485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 500 - 556
Target Start/End: Original strand, 39131267 - 39131323
Alignment:
Q  500 tttgatgaagtgaatttttcttacaccttgcagattttgttgagaatcttatcaaga 556  Q
    ||||||| ||| || ||||||||||||||||||||||||| ||||||||| ||||||    
T  39131267 tttgatggagttaaattttcttacaccttgcagattttgtcgagaatcttttcaaga 39131323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 518 - 556
Target Start/End: Complemental strand, 39379598 - 39379560
Alignment:
Q  518 tcttacaccttgcagattttgttgagaatcttatcaaga 556  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  39379598 tcttgcaccttgcagattttgttgagaatcttatcaaga 39379560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 498 - 574
Target Start/End: Complemental strand, 39419911 - 39419835
Alignment:
Q  498 gttttgatgaagtgaatttttcttacaccttgcagattttgttgagaatcttatcaagatggagaaatttgattcag 574  Q
    ||||||||||| | ||||||| ||  |||| ||||||||||||||||||||||| | || | || ||||||||||||    
T  39419911 gttttgatgaaattaattttttttggacctcgcagattttgttgagaatcttataaggaggaagcaatttgattcag 39419835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 44749735 - 44749775
Alignment:
Q  96 ccacttcctaagaagggagacaaagctgtgattattgatga 136  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  44749735 ccactgcctaagaagggtgacaaagctgtgattattgatga 44749775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 516 - 551
Target Start/End: Original strand, 39372205 - 39372240
Alignment:
Q  516 tttcttacaccttgcagattttgttgagaatcttat 551  Q
    |||||| |||||||||||||||||||||||||||||    
T  39372205 tttcttgcaccttgcagattttgttgagaatcttat 39372240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 555
Target Start/End: Complemental strand, 39493133 - 39493082
Alignment:
Q  504 atgaagtgaatttttcttacaccttgcagattttgttgagaatcttatcaag 555  Q
    |||||||| | |||||||||||||||||| ||||||  ||||||||||||||    
T  39493133 atgaagtggaattttcttacaccttgcaggttttgtcaagaatcttatcaag 39493082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 39144464 - 39144538
Alignment:
Q  20 tgacattcttgataatttgcgagaatcatcagatccagcaaaaattgttttggatattacactgaaccccattat 94  Q
    ||||||||||| |||| | | || ||||||||||||| ||||| ||||||||||||| | || |||||| |||||    
T  39144464 tgacattcttggtaatcttcaaggatcatcagatccatcaaaagttgttttggatataatacagaacccgattat 39144538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 496 - 554
Target Start/End: Original strand, 39179696 - 39179753
Alignment:
Q  496 atgttttgatgaagtgaatttttcttacaccttgcagattttgttgagaatcttatcaa 554  Q
    |||||||||||||||||| ||| ||| || ||||||||||||||| || ||||||||||    
T  39179696 atgttttgatgaagtgaaattt-cttgcatcttgcagattttgttaagcatcttatcaa 39179753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 553
Target Start/End: Original strand, 39139976 - 39140033
Alignment:
Q  496 atgttttgatgaagtgaatttttcttacaccttgcagattttgttgagaatcttatca 553  Q
    |||||||||||||||||| |||||||  ||||| |||| ||||||||  |||||||||    
T  39139976 atgttttgatgaagtgaaattttcttgtaccttacagaatttgttgaagatcttatca 39140033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 500 - 553
Target Start/End: Complemental strand, 39503199 - 39503146
Alignment:
Q  500 tttgatgaagtgaatttttcttacaccttgcagattttgttgagaatcttatca 553  Q
    |||||||||||||| |||| ||  ||||||||||||||||| |||| |||||||    
T  39503199 tttgatgaagtgaaattttgttgtaccttgcagattttgttcagaaacttatca 39503146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 516 - 556
Target Start/End: Original strand, 39125284 - 39125324
Alignment:
Q  516 tttcttacaccttgcagattttgttgagaatcttatcaaga 556  Q
    ||||||| ||||||||| |||||| ||||||||||||||||    
T  39125284 tttcttaaaccttgcagtttttgtcgagaatcttatcaaga 39125324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 178; Significance: 1e-95; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 20 - 363
Target Start/End: Original strand, 17060514 - 17060854
Alignment:
Q  20 tgacattcttgataatttgcgagaatcatcagatccagcaaaaattgttttggatattacactgaaccccattatcccacttcctaagaagggagacaaa 119  Q
    ||||||||| | |||||||| ||||||||| |||||| ||||||||||||||||| | | | ||||||||||||| ||||| ||||||||||||||||||    
T  17060514 tgacattctagttaatttgcaagaatcatcggatccatcaaaaattgttttggatgtaataatgaaccccattattccactacctaagaagggagacaaa 17060613  T
Q  120 gctgtgattattgatgatgaaagccgcatctatctgctagaaaaactgatgacaatctcaccaaatattaaaccttgtgtaagagatgaagcattgaagc 219  Q
    | |||||||||||||   ||||||||||||| | |||||||| ||||||||| ||| ||||||||||||||| ||||||||| ||| ||||| |||||||    
T  17060614 gttgtgattattgat---gaaagccgcatctttatgctagaacaactgatgataatgtcaccaaatattaaatcttgtgtaaaagacgaagctttgaagc 17060710  T
Q  220 tagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggattgcatactta 319  Q
    |||| | |||||||||||||||||| |||| |||||||||| |||| |||||||||||||||||||| ||||| |||||| |||||||||||  ||||||    
T  17060711 tagcacatgagttgaaagctaacataaaagcaaatactgaatattcattggaggttctcggatttctgttgatcttgtcggtttatggattgtttactta 17060810  T
Q  320 ttttgatgaagatgaagtcataaagctttttggatctgttgctg 363  Q
    ||||||| ||||||||||| |  | ||||||| |||||||||||    
T  17060811 ttttgatcaagatgaagtcttggatctttttgcatctgttgctg 17060854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 32 - 362
Target Start/End: Original strand, 33562169 - 33562496
Alignment:
Q  32 taatttgcgagaatcatcagatccagcaaaaattgttttggatattacactgaaccccattatcccacttcctaagaagggagacaaagctgtgattatt 131  Q
    |||| ||| |||||||||||||||| ||||| |||||||||| || | ||||||||||||  | |||||   | | ||||||||||| | ||| ||||||    
T  33562169 taatctgcaagaatcatcagatccatcaaaacttgttttggaaatgatactgaaccccatctttccactgtgtcaaaagggagacaatgttgtcattatt 33562268  T
Q  132 gatgatgaaagccgcatctatctgctagaaaaactgatgacaatctcaccaaatattaaaccttgtgtaagagatgaagcattgaagctagcgcgtgagt 231  Q
    | |||| |   ||  |||||||| || ||| ||||||||| |||||||||| ||||| |||||||||| ||| | |||||||||||||||||   ||| |    
T  33562269 gttgatta---ccaaatctatcttctggaacaactgatgagaatctcaccagatattgaaccttgtgtgagaaaagaagcattgaagctagcatttgatt 33562365  T
Q  232 tgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggattgcatacttattttgatgaaga 331  Q
    |||||||||||||||||||||||||||||  || ||||| |||||| || |||||  || ||||||| ||||||  ||||| |  || ||||||||||||    
T  33562366 tgaaagctaacatgaaagaaaatactgaattttttttggcggttcttggttttctgatgcttttgtcaatttataaattgcttgattcttttgatgaaga 33562465  T
Q  332 tgaagtcataaagctttttggatctgttgct 362  Q
    ||||||  |  ||||||||| || |||||||    
T  33562466 tgaagttttggagctttttgcatttgttgct 33562496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 499 - 572
Target Start/End: Original strand, 17061211 - 17061284
Alignment:
Q  499 ttttgatgaagtgaatttttcttacaccttgcagattttgttgagaatcttatcaagatggagaaatttgattc 572  Q
    ||||||||||||||| |||| |||  | |||||||||||||||||||||||||||||| | || ||||||||||    
T  17061211 ttttgatgaagtgaaattttgttatccattgcagattttgttgagaatcttatcaagaggaaggaatttgattc 17061284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 496 - 554
Target Start/End: Original strand, 33563363 - 33563420
Alignment:
Q  496 atgttttgatgaagtgaatttttcttacaccttgcagattttgttgagaatcttatcaa 554  Q
    |||||||||||||||||| ||| ||| || ||||||||||||||| || ||||||||||    
T  33563363 atgttttgatgaagtgaaattt-cttgcatcttgcagattttgttaagcatcttatcaa 33563420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 4e-52; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 194 - 338
Target Start/End: Original strand, 44730154 - 44730298
Alignment:
Q  194 ttgtgtaagagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgatt 293  Q
    |||||||||||||||||| ||||||||||| | |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  44730154 ttgtgtaagagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattgatt 44730253  T
Q  294 ttgtcgatttatggattgcatacttattttgatgaagatgaagtc 338  Q
    ||| |||||||| |||||| |||||| ||||||| ||||||||||    
T  44730254 ttgacgatttatagattgcttacttactttgatggagatgaagtc 44730298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 137 - 360
Target Start/End: Original strand, 45342947 - 45343170
Alignment:
Q  137 tgaaagccgcatctatctgctagaaaaactgatgacaatctcaccaaatattaaaccttgtgtaagagatgaagcattgaagctagcgcgtgagttgaaa 236  Q
    |||||| | ||||||||| |||||| ||||||||| |||||  |||| ||||||||||||||||||||| |||||||| |||||||| | ||||||||||    
T  45342947 tgaaaggcacatctatctcctagaacaactgatgagaatcttgccaagtattaaaccttgtgtaagagaagaagcattcaagctagcacttgagttgaaa 45343046  T
Q  237 gctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggattgcatacttattttgatgaagatgaag 336  Q
    |||||| |||||| |||||||||||| || ||| | ||||| || |||||| |||||||||| ||| ||| ||||| ||||| ||||||| |||||||||    
T  45343047 gctaacgtgaaaggaaatactgaaaaatcattgaacgttcttggttttctactgattttgtcaattcatgtattgcttacttcttttgataaagatgaag 45343146  T
Q  337 tcataaagctttttggatctgttg 360  Q
    || |  ||||||||| ||||||||    
T  45343147 tcttggagctttttgtatctgttg 45343170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 195 - 363
Target Start/End: Complemental strand, 44950037 - 44949869
Alignment:
Q  195 tgtgtaagagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattt 294  Q
    ||||| ||||||||||| ||||||||||| | ||||||||||  ||| || |||||||||||| |||||||||||||||||||| ||||||||||||||     
T  44950037 tgtgttagagatgaagctttgaagctagcacatgagttgaaatttaaaataaaagaaaatactaaaaattctttggaggttctcagatttctattgatta 44949938  T
Q  295 tgtcgatttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgctg 363  Q
    |  ||||||||||||||| |||||| ||||||  |||||| |||   ||||||| || |||||||||||    
T  44949937 taacgatttatggattgcttacttactttgatcgagatgatgtctctaagctttatgcatctgttgctg 44949869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 34 - 167
Target Start/End: Complemental strand, 44950169 - 44950036
Alignment:
Q  34 atttgcgagaatcatcagatccagcaaaaattgttttggatattacact-ga--accccattatcccacttcctaagaagggagacaaagctgtgattat 130  Q
    ||||||||||||||||||||  ||| ||||||||||||||||| | ||| ||  |||||||  | ||| | |||||||||||||||||||||||||||||    
T  44950169 atttgcgagaatcatcagatatagcgaaaattgttttggatataatactagacgaccccatatttccattgcctaagaagggagacaaagctgtgattat 44950070  T
Q  131 tgatgatgaaagccgcatctatctgctagaaaaactg 167  Q
    ||   ||||||||||| ||||||| |||||| |||||    
T  44950069 tg---atgaaagccgcgtctatcttctagaacaactg 44950036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 498 - 540
Target Start/End: Complemental strand, 44947497 - 44947455
Alignment:
Q  498 gttttgatgaagtgaatttttcttacaccttgcagattttgtt 540  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  44947497 gttttgatcaagtgaatttttcttacaccttgcagattttgtt 44947455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 463 - 504
Target Start/End: Complemental strand, 44949717 - 44949676
Alignment:
Q  463 tatcaaatccatattgcaattttgtatctaatcatgttttga 504  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  44949717 tatcaaatccatattgcaattttgtatctaatcatgtcttga 44949676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 44730102 - 44730151
Alignment:
Q  34 atttgcgagaatcatcagatccagcaaaaattgttttggatattacactg 83  Q
    |||||||||||||||| |||| ||| ||||| ||||||||||| ||||||    
T  44730102 atttgcgagaatcatcggatctagcgaaaatagttttggatataacactg 44730151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 463 - 491
Target Start/End: Original strand, 44730652 - 44730680
Alignment:
Q  463 tatcaaatccatattgcaattttgtatct 491  Q
    |||||||||||||||||||||||||||||    
T  44730652 tatcaaatccatattgcaattttgtatct 44730680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 152 - 338
Target Start/End: Original strand, 19808900 - 19809083
Alignment:
Q  152 tctgctagaaaaactgatgacaatctcaccaaatattaaaccttgtgtaagagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaa 251  Q
    |||||||||| ||||||||| ||||||||| || ||||||||| |||||||||| ||| ||||||||||||| | ||| ||||||||||||||||   ||    
T  19808900 tctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatga---aa 19808996  T
Q  252 aatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggattgcatacttattttgatgaagatgaagtc 338  Q
    | ||||||||||||| ||| |||||| || |||||| || |||||||  |||||| ||||| |||||||||||||||||||||||||    
T  19808997 agtactgaaaattctctggtggttcttggttttctactgcttttgtcagtttatgaattgcttacttattttgatgaagatgaagtc 19809083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 41 - 265
Target Start/End: Original strand, 16114256 - 16114477
Alignment:
Q  41 agaatcatcagatccagcaaaaattgttttggatattacactgaaccccattatcccacttcctaagaagggagacaaagctgtgattattgatgatgaa 140  Q
    ||||||| |||||||| ||| | ||||||||||||| | || |||||||  ||  |||||   ||||||||||||||| |||||||||||||||||   |    
T  16114256 agaatcagcagatccatcaagacttgttttggatataatacagaaccccggtactccactgtgtaagaagggagacaatgctgtgattattgatga---a 16114352  T
Q  141 agccgcatctatctgctagaaaaactgatgacaatctcaccaaatattaaaccttgtgtaagagatgaagcattgaagctagcgcgtgagttgaaagcta 240  Q
     ||| |||||||||| ||||| ||||||||| ||| ||||||| |||||||||| ||||||||||  ||||||||||||||||||| || |||||||||     
T  16114353 tgccacatctatctgttagaagaactgatgagaatatcaccaactattaaacctcgtgtaagagaaaaagcattgaagctagcgcgcgatttgaaagctt 16114452  T
Q  241 acatgaaagaaaatactgaaaattc 265  Q
    |||||| ||| |||||| |||||||    
T  16114453 acatgagagagaatactaaaaattc 16114477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 195 - 363
Target Start/End: Complemental strand, 6017 - 5849
Alignment:
Q  195 tgtgtaagagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattt 294  Q
    ||||| ||||||||||| ||||||||||| | ||||||||||  ||| || |||||||||||| |||||||||||||||||||| ||||||||||||||     
T  6017 tgtgttagagatgaagctttgaagctagcacatgagttgaaatttaaaataaaagaaaatactaaaaattctttggaggttctcagatttctattgatta 5918  T
Q  295 tgtcgatttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgctg 363  Q
    |  ||||||||||||||| |||||| ||||||  |||||| |||   ||||||| || |||||||||||    
T  5917 taacgatttatggattgcttacttactttgatcgagatgatgtctctaagctttatgcatctgttgctg 5849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 498 - 540
Target Start/End: Complemental strand, 3476 - 3434
Alignment:
Q  498 gttttgatgaagtgaatttttcttacaccttgcagattttgtt 540  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  3476 gttttgatcaagtgaatttttcttacaccttgcagattttgtt 3434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 463 - 504
Target Start/End: Complemental strand, 5697 - 5656
Alignment:
Q  463 tatcaaatccatattgcaattttgtatctaatcatgttttga 504  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  5697 tatcaaatccatattgcaattttgtatctaatcatgtcttga 5656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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